Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal1g0342 ATGTATACGTACCCTCCCTATGCCCTGTGTCCTGCTTTCCTTTCAGATGTGGATTCCGGCTCAGAAATCGATTGGCTTTGGATTGACATTATGTGGAGACCAGATGGAAATCCATTAGACCTTAACAATCTGCCTGATGACAACTCTAGTAGATCAGATCATCATGCTAAACAACTTCTTCCTGACACCACCTCCACATCACCACCTGGTAAAGGAAGGAAGGAAGGGTCTCATCAATCAAAATTGGTTAAATTGGATATTATTGTTGTTACAACAGTTACAGGTTATAAGGAAAAGGAAAGCGGCGATGGAAAAGACGAGTGTGGTGGAAAGGTCTACGAGTGTAGATTTTGTTCCCTCAAATTCTGCAAGTCTCAGGCTCTTGGGGGACACATGAACCGTCACCGCCAAGAGAAAGAAACAGAGAAGTTGAACAATGCTCGTCAGCTGCTCTTACGTAATGATCACAACCTTGTTGCTCAAGCTGCCCTTCACCTAGGATGTTATCCACCAATAGCAACAGCAGGGTATCATCCAGCAGGTAACATAGGAATAGGAGATCATCATCATCATCACCCAACAATGCCTTTGAGATTCCCAACATCCTTCTCTGCAGGTGGTTCATCATCCTCAACCCATGTACAACAACCATCTCAAGTTCAACAATATTTGTTCTCTTCTTCACCATCACGGCCCATGACTTTCCCTCCACATTTGCTTCCTCATGTGATGAGTAACAACCAGCACCAGCAATATGTGGCGGGTGGAGGTGATCAGTCAAGTTACACGTGCATAGGTGCACCGGTTGGACAAGGTTTTCAAGATCATCATTCTTCAACGATCAATCGGTTTCAAGATGGTTTGTAA 867 0.4441 MYTYPPYALCPAFLSDVDSGSEIDWLWIDIMWRPDGNPLDLNNLPDDNSSRSDHHAKQLLPDTTSTSPPGKGRKEGSHQSKLVKLDIIVVTTVTGYKEKESGDGKDECGGKVYECRFCSLKFCKSQALGGHMNRHRQEKETEKLNNARQLLLRNDHNLVAQAALHLGCYPPIATAGYHPAGNIGIGDHHHHHPTMPLRFPTSFSAGGSSSSTHVQQPSQVQQYLFSSSPSRPMTFPPHLLPHVMSNNQHQQYVAGGGDQSSYTCIGAPVGQGFQDHHSSTINRFQDGL* 289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal1g0342 288 SUPERFAMILY beta-beta-alpha zinc fingers 109 141 IPR036236 -
Mal1g0342 288 MobiDBLite consensus disorder prediction 42 79 - -
Mal1g0342 288 PANTHER ZINC FINGER PROTEIN JAGGED 33 279 IPR045320 GO:0003700
Mal1g0342 288 ProSitePatterns Zinc finger C2H2 type domain signature. 115 135 IPR013087 -
Mal1g0342 288 Coils Coil 134 154 - -
Mal1g0342 288 MobiDBLite consensus disorder prediction 59 73 - -
Mal1g0342 288 PANTHER ZINC FINGER PROTEIN JAGGED 33 279 IPR031113 GO:0007275
Mal1g0342 288 ProSiteProfiles Zinc finger C2H2 type domain profile. 113 140 IPR013087 -
Mal1g0342 288 Gene3D Classic Zinc Finger 92 165 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal1g0342 Mal-Chr1 3821218 3825507 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal1g0342 31 272 C2H2 Transcription Factor Family AT1G13400 38.400 1.24e-29 109
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal1g0342 - - mtr:MTR_1g110740 254.218