Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Mal1g0302 ATGGCTGGAAAAGAAGAAAATCGAATATTTGTTGGTGGATTGGGTTGGGACGTTACGGAACGTCAGCTTGAACATGCCTTTGATCGTTACGGCAAAATCCTTGAATGCCAGATCATGATGGAAAGGGATACAGGACGTCCACGTGGATTTGGGTTTATTACATTTTCAGACCGTCGGGGAATGGAGGATGCAATCAAAGAAATGGATGGACGGGAAATTGGTGATCGCATCATCTCAGTCAACAAGGCACAGCCCAGGATGGGGGGTGATGATGCAGACCAACGCTACAGAGGTGGCTTCTCTTCTGGTGGTAGGGGAAGCTATGGGGCTGGAGATAGGGTAGGACAGGATGACTGTTTCAAATGTGGGCGTCCAGGGCACTGGGCCAGAGATTGTCCTTTGGCAGGAGGTGATGGTGGTCGTGGTCGGGGTTCATTTTCTTCGCGTCCAAGGTTTGGAGGTGCTGGTGGACACGGGGATCGCCTTGGTGAACGTGAGCGATACATTGATGATCGTTATGACGGAGGACGTTATGGGGATAGGGACCGTTTAGACAACCGAGACTACAAGTATAGTGGCCGCGATCGCTATGCTAGTGACAGGTATACAGCCAGTGGAGATCGATCTGCTAGTGATCGATATGGCAGTGGGTCGGACTACCCGCAAAATGGATATGGGAAGGAAAGAGGCTATGACCGAAACGGTGGTGCTCGTGCAGGTGCTGATAGATATGGAAGTGGAATGCCAGCTCGTGATGAAGGAAGGACTTATAGGGGTAGGCCTGGTCCTTATGACCGCCCCAGCAGGGCTGCTCGGCCATCATCATTTGACCGCTATTGA 840 0.5155 MAGKEENRIFVGGLGWDVTERQLEHAFDRYGKILECQIMMERDTGRPRGFGFITFSDRRGMEDAIKEMDGREIGDRIISVNKAQPRMGGDDADQRYRGGFSSGGRGSYGAGDRVGQDDCFKCGRPGHWARDCPLAGGDGGRGRGSFSSRPRFGGAGGHGDRLGERERYIDDRYDGGRYGDRDRLDNRDYKYSGRDRYASDRYTASGDRSASDRYGSGSDYPQNGYGKERGYDRNGGARAGADRYGSGMPARDEGRTYRGRPGPYDRPSRAARPSSFDRY* 280
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Mal1g0302 279 MobiDBLite consensus disorder prediction 84 110 - -
Mal1g0302 279 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 7 85 IPR000504 GO:0003723
Mal1g0302 279 PANTHER GLYCINE-RICH RNA-BINDING PROTEIN RZ1B-LIKE 1 242 - -
Mal1g0302 279 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 9 78 IPR000504 GO:0003723
Mal1g0302 279 ProSiteProfiles Zinc finger CCHC-type profile. 119 133 IPR001878 GO:0003676|GO:0008270
Mal1g0302 279 MobiDBLite consensus disorder prediction 200 279 - -
Mal1g0302 279 Pfam Zinc knuckle 119 133 IPR001878 GO:0003676|GO:0008270
Mal1g0302 279 Gene3D - 1 114 IPR012677 -
Mal1g0302 279 SUPERFAMILY Retrovirus zinc finger-like domains 103 137 IPR036875 GO:0003676|GO:0008270
Mal1g0302 279 Gene3D - 115 143 - -
Mal1g0302 279 SUPERFAMILY RNA-binding domain, RBD 4 111 IPR035979 GO:0003676
Mal1g0302 279 SMART rrm1_1 8 81 IPR000504 GO:0003723
Mal1g0302 279 PANTHER TRANSFORMER-2-RELATED 1 242 - -
Mal1g0302 279 SMART c2hcfinal6 118 134 IPR001878 GO:0003676|GO:0008270
Mal1g0302 279 MobiDBLite consensus disorder prediction 134 163 - -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Mal1g0302 Mal-Chr1 3337864 3342323 Transposed
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal1g0302 9 88 C2H2 Transcription Factor Family AT2G19380 43.750 3.23e-16 76.6
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal1g0302 - - gmx:100809519 449.899
       

Event-related genes


Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal1g0302 1 3337864 3342323 Mal1g0302 1 3337864 3342323 ECH