Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal1g0300 ATGTCCTTTTTTGTAGTAACCACGAATTCAGGATCATATAAAACTGCTGGTCATGAATTCAAGTTGCTGTTTCTGATGAAGACAAAGATTCAGAAGTTTGAATCTTCTGCAATATCTGCTTATGGGTTGGCACTTACCAAGTGTTCTCAAATAAAATCATTTAAAGACGAATCCGTGCATTTAGTTGATGTAGTTGGTCTTTTGAATGGGAGGTCTGCTGAGAGGGAGTATGTTCAAGATGAGAGGGTTACTAAGATGGTTACCATTGAGATAATGGATAACATGTTTATATTTAGTGACAAGATTGGTTGTGCTTTGTTTGGTGAATACGTTGATATACTGAAAAAACATATGGAAAAGTCTGGTGAAGGGATGCCGGTTGTTGTTATCCAGTTTGCTAAGATCAAAAATTTTCGAGAAAATGCTTCAATTCAAAATGTCATGAATACTATCAGATTGCTCATTAATCCTGAAATTCCAGAAGCCATGGAGTTAAAAAATGGGTTGGCTATTCATGGTGTTGAATCAAAGTATCCGGTTGCTGTTATACAACCTAGGGCTAGAATATCTAAAGAAGATGACTTTCTTCGTTTGTTTTCGAAGAAAACTATTGGTGATCTCAAGAAGTGTAATGAAAAAGGTGTCTTTGTTGTTTGTGCAACTATTGTTGGTTTAGCTGATGGCGGTGACTTTTGGTATACTGCTTGCAAATGCAACCGAAAAGTGAATGCAGACTTTGGAGCTTATTATTGTGGTGGCTGTGACAAACATGTTTATCAAGTTTCTCCAAGGTTCAAGTTGGTAGTTAATGTGACTGATGAAGTTGAAGACACTGTGTTTGTTCTATTTGACTATGATGTTCACTTTCTTTGTGGGAAAACATGTTCTCAGATGATTGAGGAATCTAAGGTTGAGAATGGGGTTAGCTATCTTGCATTAGTTGGTAAGAGATTGCTCTTTAAGGTGGAAAAGAATGCTTTGGTTGGTAACTCTTTGTTGGATCAATCTTTTAAAGTTAAAAGAAATTGTGATGAAGTTGAAATCATTGAATCGTTTGTCTCTGGGGGTATCCAGGATGGTCTATCCAAGGATGTTGCCCATGTTAGTGTAGAAATCCTAGTAAGGATGCTCCACATTGTACTGACACTGAAACTCCTTAGCATCTGTTAG 1170 0.3692 MSFFVVTTNSGSYKTAGHEFKLLFLMKTKIQKFESSAISAYGLALTKCSQIKSFKDESVHLVDVVGLLNGRSAEREYVQDERVTKMVTIEIMDNMFIFSDKIGCALFGEYVDILKKHMEKSGEGMPVVVIQFAKIKNFRENASIQNVMNTIRLLINPEIPEAMELKNGLAIHGVESKYPVAVIQPRARISKEDDFLRLFSKKTIGDLKKCNEKGVFVVCATIVGLADGGDFWYTACKCNRKVNADFGAYYCGGCDKHVYQVSPRFKLVVNVTDEVEDTVFVLFDYDVHFLCGKTCSQMIEESKVENGVSYLALVGKRLLFKVEKNALVGNSLLDQSFKVKRNCDEVEIIESFVSGGIQDGLSKDVAHVSVEILVRMLHIVLTLKLLSIC* 390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal1g0300 389 CDD RPA1_DBD_C 211 322 IPR013955 -
Mal1g0300 389 PANTHER ANIMAL RPA1 DOMAIN PROTEIN 10 299 - -
Mal1g0300 389 Gene3D - 37 176 IPR012340 -
Mal1g0300 389 Gene3D - 195 347 IPR012340 -
Mal1g0300 389 PANTHER REPLICATION FACTOR A 1, RFA1 10 299 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Mal1g0300 389 CDD RPA1_DBD_B_like 63 166 - -
Mal1g0300 389 SUPERFAMILY Nucleic acid-binding proteins 201 306 IPR012340 -
Mal1g0300 389 SUPERFAMILY Nucleic acid-binding proteins 45 173 IPR012340 -
Mal1g0300 389 Pfam Replication factor-A C terminal domain 217 305 IPR013955 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal1g0300 Mal-Chr1 3314905 3317757 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal1g0300 126 296 Core DNA Replication Machinery Family AT5G61000 28.249 1.08e-09 58.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal1g0300 - - mtr:MTR_8g062030 306.99