Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal1g0293 ATGCTTCCTATGAGCTGCATTCTTTTAATGTGCCTCCTGTGTTCTTTCTTATCTCAAATCAAAGCTTTCTCCAACCTCACCTTACCCCACCAACATCCTTACCCCGAAGCTGTGGTTCACGAACTTCAACAGAAAATCAATGTGTCATTTTCTAGAAGGGAACTACTCTCAAAGGACCAAGGCTCTTGTTTAACCGGAAACCCAGTAGACGATTGCTGGCGGTGCGACCCAAACTGGTCCGCAAACCGTCAAAAATTAGCGGAATGCGGAATTGGTTTCGGCCGCGCCGCCATGGGAGGTAAAGGAGGTCAGATCTACATAGTAACAGATTCCTCCGACAACGACCCAGCAAATCCCGTTCCAGGGACACTCCGTCACGCCGTGATTCAAGACGAACCACTCTGGATAATCTTCTCCTCCTCCATGACAATAAACCTCCGTCACGAACTAATCTTCAATTCATACAAAACCGTCGACGGCCGTGGCGCAAACGTTCAAATCACCGGTCACGGTTGCATCACACTCCAATACATCTCAAACGTGATTATCCACAACATCCATGTTCATCACTGTAAACCCTCAGGGAATACTAACATACGCGCGAGTCCAACGCATGTAGGATTCAGAGGCATATCGGACGGTGACGGAATATCAATCTTTGGGTCTCGTAACATCTGGATCGACCATTGCTCATTATCTTATTGCACCGACGGTTTAATCGATGCTATAATGGGGTCCACTGCTATAACAATTTCGAATAATCATTTTGGTCATCACGATGAAGTTATGCTATTAGGTCATAATGATAAATACAGTCCTGATAAAGGAATGCAAGTTACAATTGCGTTTAATCACTTTGGTGAAGGACTTGTTCAGAGAATGCCACGGTGTAGACTTGGTTATATTCATGTTGTTAACAATGATTTTACTCAGTGGGAAATGTATGCTATTGGTGGTAGTGCTAATCCTACTATTAACAGTCAGGGTAACCGTTACACAGCTCCTTCCGATCCAAATGCTAAAGAGGTGACGAAGCGCGTGGATACAGATGATAAAGAGTGGAATGGTTGGAATTGGAGGACGGAGGGGGATATAATGGTAAATGGAGCGTTCTTTGTGCCATCAGGAGCGGGGATGAGTGCTGAGTATGCGGAGGCGTCTAGTGTGCAACCAAAATCCGTCGAGCAAATCAACCAGCTTACCATGTATTCCGGTGTATTCGGTGATCCCAGGGATAATGGTGATATATATCCCGGTTTCAACGGTGGTGGGACCACGACAGGAGCCAACAGCAAGGGTTACAATGGGAATGGGGGGTCCAGCAGTGACGATGGGGACTTCTTTGGGATGATATTCAAAGGTACCAGCAGCCAAGCAGCACCGCTAGCACCCTACTCATCATCAATTGTATTTGTTTCAACTTTTTTGTCTCTTTTAATTATTTTCAATTTGGACATTATCACCAACTATGATATTCTATTATCATTACTATGA 1494 0.4491 MLPMSCILLMCLLCSFLSQIKAFSNLTLPHQHPYPEAVVHELQQKINVSFSRRELLSKDQGSCLTGNPVDDCWRCDPNWSANRQKLAECGIGFGRAAMGGKGGQIYIVTDSSDNDPANPVPGTLRHAVIQDEPLWIIFSSSMTINLRHELIFNSYKTVDGRGANVQITGHGCITLQYISNVIIHNIHVHHCKPSGNTNIRASPTHVGFRGISDGDGISIFGSRNIWIDHCSLSYCTDGLIDAIMGSTAITISNNHFGHHDEVMLLGHNDKYSPDKGMQVTIAFNHFGEGLVQRMPRCRLGYIHVVNNDFTQWEMYAIGGSANPTINSQGNRYTAPSDPNAKEVTKRVDTDDKEWNGWNWRTEGDIMVNGAFFVPSGAGMSAEYAEASSVQPKSVEQINQLTMYSGVFGDPRDNGDIYPGFNGGGTTTGANSKGYNGNGGSSSDDGDFFGMIFKGTSSQAAPLAPYSSSIVFVSTFLSLLIIFNLDIITNYDILLSLL* 498
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal1g0293 497 PANTHER PECTATE LYASE 5 428 - -
Mal1g0293 497 PANTHER PECTATE LYASE 18-RELATED 5 428 IPR045032 GO:0030570
Mal1g0293 497 SMART amb_all 141 338 IPR002022 -
Mal1g0293 497 SUPERFAMILY Pectin lyase-like 60 381 IPR011050 -
Mal1g0293 497 Gene3D - 66 408 IPR012334 -
Mal1g0293 497 Pfam Pectate lyase 149 330 IPR002022 -
Mal1g0293 497 PRINTS Pollen allergen Amb family signature 89 106 IPR018082 -
Mal1g0293 497 PRINTS Pollen allergen Amb family signature 149 165 IPR018082 -
Mal1g0293 497 PRINTS Pollen allergen Amb family signature 315 334 IPR018082 -
Mal1g0293 497 PRINTS Pollen allergen Amb family signature 213 234 IPR018082 -
Mal1g0293 497 PRINTS Pollen allergen Amb family signature 113 138 IPR018082 -
Mal1g0293 497 PRINTS Pollen allergen Amb family signature 357 381 IPR018082 -
Mal1g0293 497 PRINTS Pollen allergen Amb family signature 293 312 IPR018082 -
Mal1g0293 497 PRINTS Pollen allergen Amb family signature 386 409 IPR018082 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal1g0293 Mal-Chr1 3236383 3244587 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal1g0293 1 482 Polysaccharide Lyase AT3G53190 62.168 0.0 578
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal1g0293 K01728 - gmx:100808438 803.127
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal1g0293 1 3236383 3244587 Mal1g0293 1 3236383 3244587 ECH
Mal1g0293 1 3236383 3244587 Mal5g4028 5 110042463 110044244 ECH
Mal1g0293 1 3236383 3244587 Mal2g2467 2 31158754 31161061 ECH