Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal1g0256 ATGGCTGCATCATCTTCATCAGCATCACTTTTTGGATTCAGAGAAGAGGATCCAAATCCGATGAACCAACAACAACATTCTCTGCCACCATCTTCATCAACTGCAACTCCAGCTGCTGCACCAGCTCAGAAGAAAAAGAGAAACCAACCTGGAACACCAAATCCAGATGCAGAGGTGATAGCACTATCTCCCAAGACCCTAATGGCAACAAACAGGTTTATATGTGAGGTATGCAACAAAGGGTTCCAAAGAGAGCAAAACCTACAGCTTCACAGAAGAGGACACAATTTGCCTTGGAAGCTTAAGCAGAAGAGTACAAAAGAGCCTAAGAGAAAGGTTTATCTTTGTCCTGAGCCCACATGCGTTCATCATGACCCTTCAAGGGCTCTTGGTGACCTCACTGGGATTAAGAAACACTACTCTCGCAAACATGGTGAGAAGAAATGGAAGTGTGATAAGTGCTCAAAGAAGTATGCTGTTCAATCTGATTGGAAGGCACATTCCAAGACTTGTGGCACCAGAGAATATAGGTGTGACTGTGGCACTCTCTTCTCCAGGAGAGACAGTTTCATAACTCACAGAGCCTTCTGTGATGCATTGGCTCAAGAGGGTCCAAGACAGCCACCAATTTCTCTAACTGGTGCCATTGGATCCCATCTCTATGGAAGCTCAAGCAACAACAATAGCATGGGTCTAAACCTATCTCAGGTAGCCTCACAAATTCCCAACATGCAACAACAACAACAAGACCACCACAACAATTCAGCCACCGAAATCTTGCGACTCGGCGCAGCTGGCGCCAATCGAACCGGACAATTCGACCACCACATGATCCCCCAGGCCACTTTCAGACCTAACTCCTTCTTCAACAACAACAACATTCATGAACCAAACCAAAACTTTGTCCCTCATGATCCTTCTCAACAACAAGGTTTAATGATGCAGAATAACCACAACAGTAACAACAACAGTCTCTTCAACATTCCAAATTTTCTTTCAAGTAACAGTACTAACAGTAGCAACAACTCATTCTCTGAACATTTGAATGTGAACAATGAAGGAACAAATTTCTTCAATGGATCAGGTGGAACAAGTAGTGCTCCATCACTCTTCAGCACTGTTTTCTCCCAAGGAGGAAACAGTAACATTAATGCTGCTAATGCTATATCATCAATGTCAGCAACTGCACTTCTTCAGAAAGCTGCTCAAATGGGTGCAACTACAAGTAATGGAAATGGTACTACCGCTACTTCACTTCTCAAAAGCTTTGGAAACAACAATACTGGTGCTAGTAATTCAGCTTCTTCTGGTGGTGCTGAACATACTCATAGCAGAGTTCAAATGGGTGGTGGTTTTGGTGGTGGGAATCATCATGATCAGAGTAATTTGCAGGATTTGATGAACTCATTTGCAGCAACTGGAAATAGTTCAGTATTTGATCATCAAAGTGGAGGAGGGGGTGTAGGGCTTGGAAGAGGAGGTGGAGATAGTAGTCAGCTGACTCGTGACTTTTTAGGAGTTGGTCATGAGATAGTGAGAAATATGAGTGGTGTTGTTGGAGGACAAAGGGATCAACAACATGCAGCTGCTTTTAACTTGCAGGCAGCTTCTTTGGAAGGATCAGATCAGAGAAACATGACCTTTGGAGGAGGAAGAGGTGGTGGTGGTGGTGGTAGTGGAGCAGGAGGGAATTTTCATTGA 1701 0.4397 MAASSSSASLFGFREEDPNPMNQQQHSLPPSSSTATPAAAPAQKKKRNQPGTPNPDAEVIALSPKTLMATNRFICEVCNKGFQREQNLQLHRRGHNLPWKLKQKSTKEPKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCDKCSKKYAVQSDWKAHSKTCGTREYRCDCGTLFSRRDSFITHRAFCDALAQEGPRQPPISLTGAIGSHLYGSSSNNNSMGLNLSQVASQIPNMQQQQQDHHNNSATEILRLGAAGANRTGQFDHHMIPQATFRPNSFFNNNNIHEPNQNFVPHDPSQQQGLMMQNNHNSNNNSLFNIPNFLSSNSTNSSNNSFSEHLNVNNEGTNFFNGSGGTSSAPSLFSTVFSQGGNSNINAANAISSMSATALLQKAAQMGATTSNGNGTTATSLLKSFGNNNTGASNSASSGGAEHTHSRVQMGGGFGGGNHHDQSNLQDLMNSFAATGNSSVFDHQSGGGGVGLGRGGGDSSQLTRDFLGVGHEIVRNMSGVVGGQRDQQHAAAFNLQAASLEGSDQRNMTFGGGRGGGGGGSGAGGNFH* 567
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal1g0256 566 MobiDBLite consensus disorder prediction 417 462 - -
Mal1g0256 566 Gene3D Classic Zinc Finger 52 121 - -
Mal1g0256 566 Pfam Zinc-finger double-stranded RNA-binding 73 95 IPR022755 -
Mal1g0256 566 MobiDBLite consensus disorder prediction 417 442 - -
Mal1g0256 566 ProSiteProfiles Zinc finger C2H2 type domain profile. 73 95 IPR013087 -
Mal1g0256 566 MobiDBLite consensus disorder prediction 542 566 - -
Mal1g0256 566 ProSitePatterns Zinc finger C2H2 type domain signature. 75 95 IPR013087 -
Mal1g0256 566 Gene3D Classic Zinc Finger 127 203 - -
Mal1g0256 566 SMART c2h2final6 73 95 IPR013087 -
Mal1g0256 566 SMART c2h2final6 149 169 IPR013087 -
Mal1g0256 566 SMART c2h2final6 114 144 IPR013087 -
Mal1g0256 566 PANTHER ZINC FINGER PROTEIN, PUTATIVE-RELATED 1 520 - -
Mal1g0256 566 MobiDBLite consensus disorder prediction 1 58 - -
Mal1g0256 566 SUPERFAMILY beta-beta-alpha zinc fingers 72 169 IPR036236 -
Mal1g0256 566 MobiDBLite consensus disorder prediction 1 39 - -
Mal1g0256 566 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 1 520 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal1g0256 Mal-Chr1 2794990 2799687 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal1g0256 43 517 IDZ Gene Family AT2G02070 49.442 1.00e-132 398
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Mal1g0256 zf-C2H2_jaz 3.5e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal1g0256 K25870 - gmx:100799389 573.163