Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal1g0249 ATGAGTAGTAATAGTTGTGGAAGAGGAGGAGGAGGAGTGAGACAGTATATAAGATCAAAAGTCCCTCGTTTGAGATGGACTCCTGAACTTCATCGTTGCTTTGTTCGTGCCATTCAAACCCTTGGTGGTCATCATAAGGCTACCCCTAAACTTGTTCTTCAGATGATGGATGTTAAAGGACTCACTATTTCACACGTCAAGAGCCATCTTCAGATGTATAGAAGCATGAGAGGTGAATTGGGAAAACAAGGTAGGACAACAAGTTCTCAACATAAAAACCAATGTCTTGAAGAGCATGATGATGGATGTGTTGATGAAGTGAATGATGTTGGTGTTGAACATTCAGCTCTGAGGAGAGAATCTGATTCTTCCTTCATTGGCCACAGTAACAACAACTTCTCAAAAAGAGCTAGAATGGAGAGGAGAAGTTCTACAACTAGTCTGCAATGTAGCAGTGAAAGAAGAAGAAGAATATGTGATGATGCAGTAACAACAAATCCGTACTGCTTTTATGACTATGTACAGCTCAATACCAATACCAATACCAATACCATGGGTGAGCATGAGAAGATGCTGTTGCAGAAAAAGAAGAATGGAATCAAGGATGAACAACAGTTTTGTGGTGGATGGCAGAGGCAGATACAACCACCACCATTCCCTCTGCTTTCAGATTATGGCAAAAACCTCACTTCTTTCAAATCTCCAAACCAAGAATCTGATTTCCCTCAGGCCAGTAATGTAAATGACAGGAAGAGCCCTTCATGGTCAATTATGAAAACTGACAGAGCACATGTAGAAGTTGAAAGTGTAGGAGGACATGAGTTGTCATTGTCACTAACATTGCAAAATCCTTCACCTCAGACAAGTAATGCTTCTTATTCGGCCAGTGGAATCAGTGAGGCAATTTCATGCAACCTTGGTCCTGCTCCTGCTCCTGCTCCTGCTCCTGCTGGTGGGTTTAGCAGCTACAAGGACTGCTCTAGAATAATATCTACTGTGAAAGAAAGGATTAATTTAGACCTATCTTTAGCCATATGTGGCAATTGA 1047 0.4145 MSSNSCGRGGGGVRQYIRSKVPRLRWTPELHRCFVRAIQTLGGHHKATPKLVLQMMDVKGLTISHVKSHLQMYRSMRGELGKQGRTTSSQHKNQCLEEHDDGCVDEVNDVGVEHSALRRESDSSFIGHSNNNFSKRARMERRSSTTSLQCSSERRRRICDDAVTTNPYCFYDYVQLNTNTNTNTMGEHEKMLLQKKKNGIKDEQQFCGGWQRQIQPPPFPLLSDYGKNLTSFKSPNQESDFPQASNVNDRKSPSWSIMKTDRAHVEVESVGGHELSLSLTLQNPSPQTSNASYSASGISEAISCNLGPAPAPAPAPAGGFSSYKDCSRIISTVKERINLDLSLAICGN* 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal1g0249 348 Pfam Myb-like DNA-binding domain 24 74 IPR001005 -
Mal1g0249 348 Gene3D - 21 77 - -
Mal1g0249 348 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL7-LIKE 3 348 IPR044848 GO:0003700
Mal1g0249 348 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 18 78 IPR017930 -
Mal1g0249 348 MobiDBLite consensus disorder prediction 232 253 - -
Mal1g0249 348 MobiDBLite consensus disorder prediction 128 148 - -
Mal1g0249 348 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 22 75 IPR006447 GO:0003677
Mal1g0249 348 SUPERFAMILY Homeodomain-like 20 75 IPR009057 -
Mal1g0249 348 PANTHER MYB-LIKE DNA-BINDING DOMAIN, SHAQKYF CLASS PROTEIN 3 348 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal1g0249 Mal-Chr1 2716661 2719959 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal1g0249 6 141 G2-like Transcription Factor Family AT1G14600 48.299 1.10e-32 120
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Mal1g0249 Myb_DNA-binding 6.8e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal1g0249 - - mtr:MTR_1g112370 522.316
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal1g0249 1 2716661 2719959 Mal1g0249 1 2716661 2719959 ECH