Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal1g0245 ATGAGAGATACTCACCAGTTAAACACTGGTACGACAATAGATCTTGAATTTCACGATCAGCCATGGAAGAAAAATACTCCATATTGTTCTTTTTATTCACCAGCTTCTTCTTATGGTTCATGTGATGAAAAGTGTGAGTTGTGCGCCAAAAGGTTCAACTCTGGCCATGCACTCGGTGGCCACAAGGATATTATTTATGAGAAACTGAAACATACTTGTCATGTTTGCAACAAAGTTTTCTCATCCAACAAGGCTTTGTGCGGACATATGAGATTGCACTCTCAAAAGGGTTTCAAAGGTATTCATTCGCCAACAACATCCAAAATATCATTCATGGCGAATATCTTAATGGTTGTGATGGTCATGCTCCCCTACAAAAAAAGCTCAAAGTTTCAAGCAATGTGGATAATGACAAGATCGAGAAACAAATTAGTTACATTGATGAAACACCGGCTAACAAGGTGA 465 0.3849 MRDTHQLNTGTTIDLEFHDQPWKKNTPYCSFYSPASSYGSCDEKCELCAKRFNSGHALGGHKDIIYEKLKHTCHVCNKVFSSNKALCGHMRLHSQKGFKGIHSPTTSKISFMANILMVVMVMLPYKKSSKFQAMWIMTRSRNKLVTLMKHRLTR* 155
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal1g0245 154 Gene3D Classic Zinc Finger 43 97 - -
Mal1g0245 154 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY 71 110 - -
Mal1g0245 154 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY 42 63 - -
Mal1g0245 154 ProSiteProfiles Zinc finger C2H2 type domain profile. 71 98 IPR013087 -
Mal1g0245 154 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY-RELATED 42 63 IPR044653 GO:0003700
Mal1g0245 154 Pfam C2H2-type zinc finger 71 95 - -
Mal1g0245 154 Pfam C2H2-type zinc finger 44 62 - -
Mal1g0245 154 SUPERFAMILY beta-beta-alpha zinc fingers 44 93 IPR036236 -
Mal1g0245 154 ProSitePatterns Zinc finger C2H2 type domain signature. 73 93 IPR013087 -
Mal1g0245 154 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY-RELATED 71 110 IPR044653 GO:0003700
Mal1g0245 154 SMART c2h2final6 71 93 IPR013087 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal1g0245 44 93 C2H2 Transcription Factor Family AT3G53600 33.333 1.91e-06 43.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Mal1g0245 zf-C2H2_6 1.5e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal1g0245 - K09228 mtr:MTR_1g052185 113.235