Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal1g0243 ATGGCTCCTATTTTTACTCCTGTTTCCGCCATTGTGGTTGGTAAGATTAATCTGAAGCTAAAAGTTCGTGTCATCAATCTATGGAGTGTTCCAGACTACACCAAATCTTCTGAAGAAAATTTCATGCACATGGTTCTACTCGATGAAAAGCTTGGGAAGATTCAAGCAACTGCAAGGAAAAATTTGCTGCCTAAGGTTAGATCTGAAGTTCAGGAAGGTTGTGCTTATGAAATCACTAATGTACTGGTCTGTCACAATGATCCTAAGTTTCAGACTACCAGACATCGGTTTAAGTTGAATCTCATTGAGAAAACAGAATTTACCAAAATTGATGAAAGTGCTATTCCTATGAACCATTTTGATTTTGTATCTTTTAAAGATATACTGGAGTCGGAGAGGGAGGACAAATATCTTGATGTTATTGGACACATTGTTGAAAAAAATGAGTTGAAAGATAAAGAATATAATGGTGGGAAAAGTAAGCTCATTGATGTAACATTGGAGGATTCTGAAGGTAACCGTATCCATTGCTCTCTTTGGGGAAAATATGCCGAACACATGCATTCTGTTTTGACAAGTTCTGAAACCTCATCTCCGGTTGTGGTTGTCATACAACTCTGCAAACTCAAGAAATTTTATGGCGCAATGGGGATTTCAAATGCATTTTATGGAACTAAACTTATATTTAACGCTGATTTACCTGCTATTAAAGAGTATAGCAACAAAATTGGGGATGCGGATGTTGAGGTCACACAGGGTGTTAGTCAAATCAGTGGAAATCAGTTGGTTCCATTAGCCGATGATATGCTTAAGACTCGCTACATGACAATTGAAAACTTGATTGAGTCTTCTGATCAAGGTTGTGGAATAGTACTTGCAACAATTTGTGATATTGAAAAGGAGTATGGTTGGTACTATGATGCATGTAACAGATGTGCTGCAAGGATCAAAATAGTTGTAGGGAGGATAAGCTGTCCAAGATTCCATGTCCAGGTGATGGATACCACAGGTTCCACCAGTTTTATTTTGTTCGATCGTAATGTTACAAATTTTGTTGGAAGGAGTGTGCAAGATTTTATTGATGCCCAAGGCCAGAATAACATATCTAGCGAATATCCATCAGATATCGATATTTTAGTGGGAAAACAGTTGCTGTTTAAGGTTGAAATTACAGACGGAAATTTAGTGCATAACTGGCGCAATTATGCTGTTAAGCGCGCATCTGATGATGTTGATCTTATAAAAAAATTCATAGCTCTTCACAATATTAAGACATGTGCTGAAGATGAAGTAACTGGAGAGGATGATGCTAATATTTTGAACTTAGTTGATGATTTACCATTAGAGAAGCGATTGATTGAGTGTGGTGATTCAACCAATTCTGAAGTCAAAGAGAAAGATGTTGGAGAGACTCCAGTGAGCAAAACCAGTGGCAAAAGGTCTTCTGATAGCTTGGAAACTGTGGAGTTGGAAATAGCTGAATTTGGGGAGGGATCTATCACCAAGCCACCAAAAGCTGTGCGTGTTAAGATTGAGAAGGATAATTGA 1548 0.3786 MAPIFTPVSAIVVGKINLKLKVRVINLWSVPDYTKSSEENFMHMVLLDEKLGKIQATARKNLLPKVRSEVQEGCAYEITNVLVCHNDPKFQTTRHRFKLNLIEKTEFTKIDESAIPMNHFDFVSFKDILESEREDKYLDVIGHIVEKNELKDKEYNGGKSKLIDVTLEDSEGNRIHCSLWGKYAEHMHSVLTSSETSSPVVVVIQLCKLKKFYGAMGISNAFYGTKLIFNADLPAIKEYSNKIGDADVEVTQGVSQISGNQLVPLADDMLKTRYMTIENLIESSDQGCGIVLATICDIEKEYGWYYDACNRCAARIKIVVGRISCPRFHVQVMDTTGSTSFILFDRNVTNFVGRSVQDFIDAQGQNNISSEYPSDIDILVGKQLLFKVEITDGNLVHNWRNYAVKRASDDVDLIKKFIALHNIKTCAEDEVTGEDDANILNLVDDLPLEKRLIECGDSTNSEVKEKDVGETPVSKTSGKRSSDSLETVELEIAEFGEGSITKPPKAVRVKIEKDN* 516
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal1g0243 515 CDD RPA1_DBD_A_like 19 105 - -
Mal1g0243 515 Gene3D - 266 418 IPR012340 -
Mal1g0243 515 PANTHER REPLICATION FACTOR A 1, RFA1 30 422 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Mal1g0243 515 MobiDBLite consensus disorder prediction 461 484 - -
Mal1g0243 515 SUPERFAMILY Nucleic acid-binding proteins 279 404 IPR012340 -
Mal1g0243 515 Gene3D - 114 250 IPR012340 -
Mal1g0243 515 SUPERFAMILY Nucleic acid-binding proteins 5 111 IPR012340 -
Mal1g0243 515 CDD RPA1_DBD_B_like 139 239 - -
Mal1g0243 515 PANTHER BNAC07G49340D PROTEIN 30 422 - -
Mal1g0243 515 SUPERFAMILY Nucleic acid-binding proteins 119 241 IPR012340 -
Mal1g0243 515 Pfam Domain of unknown function DUF223 44 136 IPR003871 -
Mal1g0243 515 Gene3D - 4 112 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal1g0243 Mal-Chr1 2662782 2665134 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal1g0243 20 391 Core DNA Replication Machinery Family AT5G08020 20.907 1.10e-07 52.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal1g0243 - - mtr:MTR_1g105785 558.14