Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal1g0239 ATGTCTCCTATGTTTACTCCAATTTCTGCTATAGTTGCAGGAAAAACGAATTTAAGTTTGAAGGTTCGCGTAATTCATATGTGGAATGTAACTTCGAGAAAAAACCCTTCCGAAGTTACCTGTATGAATATGTTGTTTGTTGATGAAAAGTCTGATAGGATTCATGCTACTGTGAGAAAGCATTTGGTGCCAAAGATAAAAGATATGGTTGAAGAAGGATCAACATATGTGGTTGATAATATATTAGTTGCTGGAAATGATACTAAGTACAAGATCACGCCACATAAGTACAAGCTCAATTGCATGTTTTCTACGAACTTTATCAAAATCAAAGATAATCATATTCCAATCAACCATTTTGATTTTGTGACATTCAATGAAATTTTAAATTCAACAGATGAGGAAAGGATAATTGATGTTATTGGCCATGTCATTGAAAAGGATGATATTAGAGAGTCTCTAAAGGATGATAAAAATACAAAGAAGATGGACCTTACATTAGAGGATTTAGAAGGACATAGGATTCTTTGTACTCTTTGGGATGATTTCGCTGAACAAATGAAGAGGTTTTTTGACAAACATGATTCAAAAAACCCTGTAATCATGATACTCCAGTTGTGCAAAATAAAGAGATATCTTGGTGCAATGGGTATATCCAATTCATGGTATGGAACAAAATTAATGCTCAATGGCGATCTAGACGTTGTCCAAGATTATATGAATAAAATGAATGCTGCTGAAGTGGAACTGACCCAAGGCGTGAGCCAGATCACCGTTCCTAAAGTTGTTCCATTAACAGATGATTTTATGAATACCCAAAGAATGACAATTGATGAATTGCTTGAATCAACTGAATTATCCATGTTCACAATTTTTATGTCAACTAATGTTATATTGTTTGATGTTTATGTGTATAGGGCATTGCTCGATTACCAGGTTTGTTTGCCAATGACTTTGGTGCTGAAATCAATCGTCATGTCATATTGGTTGATCCAAAAAGTAATCAATTCGAAGTCTTGGTTGAGAAAAAAAAAGGTAAAATCAAATTTACTAAGGGTTGGTATGCTCTACGTGATTTTTATCAACTTCGTTTTGGAGGATGGGTGA 1107 0.3406 MSPMFTPISAIVAGKTNLSLKVRVIHMWNVTSRKNPSEVTCMNMLFVDEKSDRIHATVRKHLVPKIKDMVEEGSTYVVDNILVAGNDTKYKITPHKYKLNCMFSTNFIKIKDNHIPINHFDFVTFNEILNSTDEERIIDVIGHVIEKDDIRESLKDDKNTKKMDLTLEDLEGHRILCTLWDDFAEQMKRFFDKHDSKNPVIMILQLCKIKRYLGAMGISNSWYGTKLMLNGDLDVVQDYMNKMNAAEVELTQGVSQITVPKVVPLTDDFMNTQRMTIDELLESTELSMFTIFMSTNVILFDVYVYRALLDYQVCLPMTLVLKSIVMSYWLIQKVINSKSWLRKKKVKSNLLRVGMLYVIFINFVLEDG* 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal1g0239 368 CDD RPA1_DBD_A_like 19 105 - -
Mal1g0239 368 SUPERFAMILY Nucleic acid-binding proteins 119 243 IPR012340 -
Mal1g0239 368 PANTHER REPLICATION FACTOR A 1, RFA1 17 348 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Mal1g0239 368 CDD RPA1_DBD_B_like 139 240 - -
Mal1g0239 368 PANTHER ANIMAL RPA1 DOMAIN PROTEIN 17 348 - -
Mal1g0239 368 Pfam Domain of unknown function DUF223 44 132 IPR003871 -
Mal1g0239 368 Gene3D - 114 251 IPR012340 -
Mal1g0239 368 Gene3D - 4 113 IPR012340 -
Mal1g0239 368 SUPERFAMILY Nucleic acid-binding proteins 5 112 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal1g0239 Mal-Chr1 2639084 2641647 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal1g0239 7 214 Core DNA Replication Machinery Family AT5G08020 24.186 5.60e-09 55.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal1g0239 - - mtr:MTR_1g105785 308.531