Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal1g0224 ATGATGGAATTTGATGAGTATGAATATTTAGAGAAAACTGTTGATAATTCTCAACTTAATGGTGTGGAAAAGACTGTGAAATCTGATGATAGAGTTCGTAGTCGAAGCTCCAAGCATGGTGATGATGATGATGTTGATGTTGATAACTGGTTCAAGTATTCCAATTCTAGAGACCGTTCATCTCGTCACCGTTCACGGTCTAGAGATGGAGACAAGGACAAGGATCGGCATAGAAGCTCTCAGGTTAATGGGGATAGGAAGAGAGATAGGGAGAGAGACAGAGGCGGGGATGTTGAAAGAGAGAGAAGGAATCGAGGGAGTGAGAGTGAAAGAGAGAAAGAGCGCTCTCAGCGAAGCAAAACTAGTTCTGGAAGGCATCAAAGTGATGTGTATAACGGAGATAGAGAGAGAAGCCGTGACAGAGAAAATAGAGACAGAGAAAGAAGCCGAGATAGAGGAATGGCAAGGGACTTGAAGGAACCAGATAGAGAAAATAGACGGCATAAAGAGAAGAAGGAAGAAACAGCAGAACCTGAGATTGATCCTGAAAGAGATCAAAGAACCGTGTTTGCTTATCAGATTTCTCTTAAAGCGGATGATAGAGACGTTTACGAGTTCTTCTCAAGAGCTGGCAAGGTGCGAGATGTTCGCTTGATTATGGACCGCAGTTCAAGACGTTCTAAAGGTGTTGGGTATATTGAGTTCTATGATGTCATGTCTGTCCCCATGGCAATAGCGCTTTCGGGTCAACCTCTTCTTGGTCAACCAGTGATGGTGAAGCCATCAGAAGCAGAAAAGAATTTGGTTCAGTCTACAGCATCTGTTGCTAGTGGAAATTTAGGCCCTTATTCTGGGGGTGCAAGAAGACTCTATGTTGGCAATCTGCATTCCAGTATCACTGAAGCGGATCTTCGTAGGGTGTTTGAAGCATTCGGTCAAGTTGAGCTAGTCCAGATGCCTCTTGATGACATTGGGCATTGCAAAGGTTTTGGCTTTGTGCAGTTTGCCCGCCTTGAGGATGCAAAAAATGCTCAGAGCTTGAATAGCCAATTGGAGATTGGTGGCAGGACAATCAAGGTATCAGCTGTTACTGATCAATCTGGAATGCAAGAATTCGGAGGAAATACTGGTGATATTGATGATGATGAAGGTGGTGGCTTGTCCTTGAATGCCTCTTCCCGAGCATTACTCATGCAGAAGTTGGATCGCACTGGCATTGCGTCAAGCATGGTTGGTTTGTTGGGAAATTCTGTTGTCAACAATACAGGCCTTAATCTGCAAACAATGGGAAACATACCAGCAGTAGCTCTTATGGGAGCTGCAGTAGCTGGAATGCCAGGTGGAGGTCTCCAAAATGCAATGCTGACAAGTCCTACTATTGATACAATCGGCATTCCAAGTGAATGCTTATTGTTAAAGAATATGTTTGATCCGGAAAATGAGAAGGAACCAGACTTTGATTTGGACGTTAAAGAAGATGTTGAAGCAGAGTGCGATAAGTTTGGGAACTTAAAACATATATATGTTGATAAGAGGACTGCTGGATTTGTCTACTTACGATTTGAAAATACCCAATCTGCAATAAGTGCACAGCGGGCCTTACATGGAAGATGGTTTGCAGGGAAAATGATCACTGCAAGCTTTATGGTGCCCCAGTCATACGAGGATAGATTCCCAAACAGCAAATGA 1689 0.4352 MMEFDEYEYLEKTVDNSQLNGVEKTVKSDDRVRSRSSKHGDDDDVDVDNWFKYSNSRDRSSRHRSRSRDGDKDKDRHRSSQVNGDRKRDRERDRGGDVERERRNRGSESEREKERSQRSKTSSGRHQSDVYNGDRERSRDRENRDRERSRDRGMARDLKEPDRENRRHKEKKEETAEPEIDPERDQRTVFAYQISLKADDRDVYEFFSRAGKVRDVRLIMDRSSRRSKGVGYIEFYDVMSVPMAIALSGQPLLGQPVMVKPSEAEKNLVQSTASVASGNLGPYSGGARRLYVGNLHSSITEADLRRVFEAFGQVELVQMPLDDIGHCKGFGFVQFARLEDAKNAQSLNSQLEIGGRTIKVSAVTDQSGMQEFGGNTGDIDDDEGGGLSLNASSRALLMQKLDRTGIASSMVGLLGNSVVNNTGLNLQTMGNIPAVALMGAAVAGMPGGGLQNAMLTSPTIDTIGIPSECLLLKNMFDPENEKEPDFDLDVKEDVEAECDKFGNLKHIYVDKRTAGFVYLRFENTQSAISAQRALHGRWFAGKMITASFMVPQSYEDRFPNSK* 563
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal1g0224 562 CDD RRM3_RBM39_like 467 549 - -
Mal1g0224 562 PANTHER SPLICING FACTOR (PAD-1), PUTATIVE (AFU_ORTHOLOGUE AFUA_1G15810)-RELATED 2 559 - -
Mal1g0224 562 SUPERFAMILY RNA-binding domain, RBD 288 555 IPR035979 GO:0003676
Mal1g0224 562 MobiDBLite consensus disorder prediction 129 183 - -
Mal1g0224 562 MobiDBLite consensus disorder prediction 24 122 - -
Mal1g0224 562 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 187 264 IPR000504 GO:0003723
Mal1g0224 562 TIGRFAM SF-CC1: splicing factor, CC1-like family 56 559 IPR006509 GO:0003723|GO:0005634|GO:0006397
Mal1g0224 562 SMART rrm2_1 469 547 IPR003954 GO:0003676
Mal1g0224 562 SMART rrm2_1 289 361 IPR003954 GO:0003676
Mal1g0224 562 Pfam linker between RRM2 and RRM3 domains in RBM39 protein 380 486 IPR029123 -
Mal1g0224 562 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 290 359 IPR000504 GO:0003723
Mal1g0224 562 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 197 256 IPR000504 GO:0003723
Mal1g0224 562 Gene3D - 282 391 IPR012677 -
Mal1g0224 562 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 288 365 IPR000504 GO:0003723
Mal1g0224 562 Gene3D - 463 562 IPR012677 -
Mal1g0224 562 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 468 551 IPR000504 GO:0003723
Mal1g0224 562 SUPERFAMILY RNA-binding domain, RBD 183 286 IPR035979 GO:0003676
Mal1g0224 562 MobiDBLite consensus disorder prediction 20 183 - -
Mal1g0224 562 CDD RRM1_RBM39_like 188 260 - -
Mal1g0224 562 PANTHER CC1-LIKE SPLICING FACTOR 2 559 - -
Mal1g0224 562 Gene3D - 180 273 IPR012677 -
Mal1g0224 562 SMART rrm1_1 469 547 IPR000504 GO:0003723
Mal1g0224 562 SMART rrm1_1 188 260 IPR000504 GO:0003723
Mal1g0224 562 SMART rrm1_1 289 361 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal1g0224 Mal-Chr1 2521896 2531725 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal1g0224 189 361 Eukaryotic Initiation Factors Gene Family AT4G34110 27.957 2.17e-06 48.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal1g0224 K13091 - gmx:100789839 712.99
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal1g0224 1 2521896 2531725 Mal1g0224 1 2521896 2531725 ECH