Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal1g0173 ATGGAGAACGACACCACCGCCACCAACAACGGCACGGCCAAAGTAGGTCCCGGCGGAGTCAAATCCAACAATCACATCCATGAAGAAGAAGAACATTCCAATTTGAACAGCGTCGAAAACCTACCAGAAAAAATCGAAGAAAAAGAAGAAGAAGATAAAAACGAAGAGGTACAACAACAAACTGGATCTGAAACCACCGCTCAACAACCTTCCAGAACTCCTTTCACTAATCTCAGCCAAGTCGATGCTGACCTAGCCCTCGCTCGAACCCTTCAAGAGCAGGAAAGGGCGTACATGATGCTGAGAATGAACAATGATGGAAGTGACTATGGGAGTTGGGAAGGTGGGAGCTATTTGCATGATGATGGAGATGATTTTGATGATCTACATGATGGCACTGATGTGGATGAGGATGATGAGGATGACGATGATGAAGACGATGATAATGAAGAGGAATATGAAGATGATGACGCATTCGATGTCCATGATCATGCTAATGTTGAAGAGCATGATAATCCCGTCATTGAATTTGACCCAGAGCTGTTTTCAAGTGATGAAGCCTATGCAAGAGCATTACAGGAGGCTGAAGAGAGGGAAATGGCAGCTAGACTGATGGCTCTTGCTGGGATACATGATCAATCTCTAGTTTCGTTTTCAATTACAGAGGACGCCGAGGACATGGAGGAACATGGTGCTAACTCTCAGGATGCTTGGGAGGATGTTGATCCAGATGAACTTTCATATGAGGAACTACTGGCACTGGGCGAGGTAGTAGGAACTGAGAGCAGAGGTCTTTCGACCGATACTATTGCCTGTTTACCTTCAGTCAACTATAAGACAGGGAGTGATCAACTTGGGAGCAATGATTCGTGTGTCATTTGCCGGGTAGACTATGAGGATGATGAGTCCTTGACAGTTCTTTCCTGCAAACATCTGTACCACCCCGAGTGCATTAACAACTGGTTGAAAATAAACAAGGTTTGCCCTGTTTGCAGTACAGAGGTATCTGCTTCTGGGAGCAACTTGTAG 1029 0.4538 MENDTTATNNGTAKVGPGGVKSNNHIHEEEEHSNLNSVENLPEKIEEKEEEDKNEEVQQQTGSETTAQQPSRTPFTNLSQVDADLALARTLQEQERAYMMLRMNNDGSDYGSWEGGSYLHDDGDDFDDLHDGTDVDEDDEDDDDEDDDNEEEYEDDDAFDVHDHANVEEHDNPVIEFDPELFSSDEAYARALQEAEEREMAARLMALAGIHDQSLVSFSITEDAEDMEEHGANSQDAWEDVDPDELSYEELLALGEVVGTESRGLSTDTIACLPSVNYKTGSDQLGSNDSCVICRVDYEDDESLTVLSCKHLYHPECINNWLKINKVCPVCSTEVSASGSNL* 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal1g0173 342 Pfam Ring finger domain 289 331 IPR001841 -
Mal1g0173 342 ProSiteProfiles Zinc finger RING-type profile. 291 332 IPR001841 -
Mal1g0173 342 SUPERFAMILY RING/U-box 282 336 - -
Mal1g0173 342 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 256 338 IPR013083 -
Mal1g0173 342 MobiDBLite consensus disorder prediction 23 48 - -
Mal1g0173 342 MobiDBLite consensus disorder prediction 59 80 - -
Mal1g0173 342 MobiDBLite consensus disorder prediction 1 80 - -
Mal1g0173 342 MobiDBLite consensus disorder prediction 108 159 - -
Mal1g0173 342 PANTHER E3 UBIQUITIN LIGASE BIG BROTHER-RELATED 28 340 - -
Mal1g0173 342 PANTHER E3 UBIQUITIN LIGASE BIG BROTHER-RELATED 28 340 IPR043312 -
Mal1g0173 342 MobiDBLite consensus disorder prediction 127 158 - -
Mal1g0173 342 SMART ring_2 291 331 IPR001841 -
Mal1g0173 342 MobiDBLite consensus disorder prediction 1 17 - -
Mal1g0173 342 CDD RING-H2_PA-TM-RING 291 331 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal1g0173 Mal-Chr1 1911387 1917881 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal1g0173 59 226 C3H Transcription Factor Family AT3G19910 48.571 6.81e-34 123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal1g0173 K19045 - gmx:100787418 449.899
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal1g0173 1 1911387 1917881 Mal1g3259 1 52558426 52570263 ECH
Mal1g0173 1 1911387 1917881 Mal1g0173 1 1911387 1917881 ECH