Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal1g0167 ATGCCTTGTAAGCATGCTTATCATGATGATTGCTTGCTTCCATGGCTTCAATTGCATAACTCTTGCCCTGTTTGTCGGTATGAATTGCCAACTGATGATGCTGATTATGAGAGCCGGGGTGGGGAGGGCAACGGTGGCGATGGGTTGAGGTCTGTTGTTGGTGGTAACAGTACTGGTGGTGATGGTGCTAGCAGTGGTGGTGGTGGAGGAGGAAGTAGACCTGTCCACAGGACTTTCAGAATATCTCTGCGGTATCCTTTTGGTTCAGGTGACTCTGCTCAGGACTCTGGTGAAAGGGGATTTGGAAATAGGCAAGAAGATTTCGATTGA 330 0.4879 MPCKHAYHDDCLLPWLQLHNSCPVCRYELPTDDADYESRGGEGNGGDGLRSVVGGNSTGGDGASSGGGGGGSRPVHRTFRISLRYPFGSGDSAQDSGERGFGNRQEDFD* 110
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal1g0167 109 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 42 IPR013083 -
Mal1g0167 109 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 1 93 - -
Mal1g0167 109 ProSiteProfiles Zinc finger RING-type profile. 1 26 IPR001841 -
Mal1g0167 109 SUPERFAMILY RING/U-box 1 32 - -
Mal1g0167 109 MobiDBLite consensus disorder prediction 33 109 - -
Mal1g0167 109 Pfam Zinc finger, C3HC4 type (RING finger) 2 25 - -
Mal1g0167 109 PANTHER OS06G0101300 PROTEIN 1 93 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal1g0167 Mal-Chr1 1827912 1828241 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal1g0167 1 55 C3H Transcription Factor Family AT3G02340 53.571 2.66e-16 71.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal1g0167 K11982 - gmx:100785289 116.316