Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal1g0145 ATGGGTCGTGGAAGAATATCTATGGAACTCATTCAAAAGGAGAAATCAAGGAAAACAACATTTCAAAAGAGAAAGGACGGATTAATGAAAAAAGTGAATGAATTTTCCATTCTTTGTGATGTTGATGTTTGTGTGATTCTCTATGCTCCCAATTTTGAAGGTCAAGGATTTGCTGAGCCCGAAACATGGCCTAAAGACACAAGAGAGGTACAAAGAATCCTTCAAAAGTACTACAACACAACAATTGATAGGCGTCCTAAAATCTATGATGTTCAAGAGTATTTTAAGGAAAGGGTGAAAAAAGTTGAATTTGAGATTTTCAAAGTGCGTAGAGAGAAGTTAAAGAAGATGTATCCAACTTGGAATGAATCTCTCAATTCTCTTGGATCGGAACAATTGATGTTATTTGCTAGCAAACTGGATGCTAAGCTTGATGCTTGTAATCAAAAGAAGCATATGCTGAAAGGAGATGTTAAGGGAGAAACAATAGCTCATGAATCACACAAGGTAGAGAAACTTATTGGTACTCCTTACTTGGCCCCTAATCCAAGTAATTACTTCAATCTCATGCAAAACAACATGTCTCAGGCACAAACTTATCCTCCAATAGTGAATATTAGTGATAAAAACCCCTTAGGGTTTTGGCCACTTCAACTGGGACAAAGCTCTCAACCTTCTTCTCTGGTTTCCGGTATACAAAGCTCGCACCATGTGGAGTCTGAGGAGGGTAGATATGCGCAGTCTTACCCCTACAAGCAGATTGATGTTAATTGGGCTGATCAGGTTAATGCTAATGTTAACTACGATCCCAAAATCGATATGGAGAGGAAGGGTGGAGCTGAAAATGATGAAAACTTGTCACCATACTATTACAATGGAAATGCAATGGCAATGCAATCATATCCTATTGCTATGCATACTCTTCCTTTTCAGAATCTTTCAAACCTACCACATGGATTTCAACTTAATGGATTCGATGATAAGGATATTCTTCAAGCTCATATGTTCAACTACATGGATGGAAGGAAGTAG 1032 0.3798 MGRGRISMELIQKEKSRKTTFQKRKDGLMKKVNEFSILCDVDVCVILYAPNFEGQGFAEPETWPKDTREVQRILQKYYNTTIDRRPKIYDVQEYFKERVKKVEFEIFKVRREKLKKMYPTWNESLNSLGSEQLMLFASKLDAKLDACNQKKHMLKGDVKGETIAHESHKVEKLIGTPYLAPNPSNYFNLMQNNMSQAQTYPPIVNISDKNPLGFWPLQLGQSSQPSSLVSGIQSSHHVESEEGRYAQSYPYKQIDVNWADQVNANVNYDPKIDMERKGGAENDENLSPYYYNGNAMAMQSYPIAMHTLPFQNLSNLPHGFQLNGFDDKDILQAHMFNYMDGRK* 344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal1g0145 343 Gene3D - 13 102 IPR036879 GO:0003677|GO:0046983
Mal1g0145 343 PANTHER MADS BOX PROTEIN 3 250 - -
Mal1g0145 343 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Mal1g0145 343 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 11 51 IPR002100 GO:0003677|GO:0046983
Mal1g0145 343 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Mal1g0145 343 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Mal1g0145 343 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Mal1g0145 343 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL82 3 250 - -
Mal1g0145 343 CDD MADS_SRF_like 2 78 IPR033897 GO:0000981|GO:0000987|GO:0045944
Mal1g0145 343 SUPERFAMILY SRF-like 2 98 IPR036879 GO:0003677|GO:0046983
Mal1g0145 343 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal1g0145 Mal-Chr1 1646931 1647962 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal1g0145 1 133 Type I MADS-box Gene Family AT5G55690 41.791 1.25e-25 102
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Mal1g0145 SRF-TF 1.3e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal1g0145 - - mtr:MTR_1g114730 561.992