Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal1g0135 ATGCTTGATAATGTGGACGATATTCATCATTTCATCGACTCAACTCGAAGACTATGTGCTCTTGTAGGTGGCTGGGTTTCTGGTTTAATTTCAAAACCTTACACAAAATTGGTTGGCTCAGCATTTGATGGTTCTATTTTTAGGTTGGCCAAGGAAAGAGAAAATTGTTATCTAGATTACATGGATCAGCAGTGTATATATATTAGTTCATCAGATGATGAGTTGGAGGAGATAGTAGATCCTGGGAGGATTCTCCCAAAATGGGCTGCTTCTGAAAGGAATTCAGATTCAAGAAGGGCAAAAAGTTCAAACGCGAGCTCGTCTAACGTTTTTAGTCATTCACAAGTTAAGCCCCGTAATCAACCTGGTCCCAGCAATGGAAGCACAAGTCAGCATCAGGCAGTAAATTCCCGAATTTCTAATACTAATGGTGCCGGTTATGAGAAAATGTCATCTCAACAAGCTTTCAACAGGACCCTTCCACCATCTTTTCAATCATCTACAACAAGGGTTGCACCTGATAACAAATTAAGCAACTTAAGCAGCAGTCAGCTTCATGATGCATATAGGAGTCGTCACCACGGAGTAGGACCTAGCACGTCCAGCGAGAAGGGCTATTTTCGTGACAACTTTAGCAGAGGCAATGATGGAGATCGTTTCATGAATCAGAATGGTGGGATTAGGGCTCTTCCTCCATCTTTGACTCTTGGAAAGGCTATAACTCCACCATTTGCTAGTTCTAGTGAATCTGCATACCGTTCTGGAGTAGGTGATGAAAGGGTTCCTGCAAATGATGAGAGACTGATTTATGAAGCAGCATTACAGGATATCAGTCAACCATTAAAAGAAGCTGATTTACCTGCGGGTATAATGTCTGTCCCTCTTATGAGACATCAGAAAATTGCATTATATTGGATGCTTGGGAGGGAAACCAGGAGTTTGCATTGCTTGGGGGGGATTTTGGCTGATGATCAGGGCCTTGGAAAGACAATTTCAACGATTGCTCTCATCCTAATGCAAAGGCCATTACAGGCGAAATGGAAAACAGATGATTCATGCAATCATAAAGCTGAAGCCTTGAATTTGGATGACGATGATGATAATGGTAGTATTGATGTGGAAAAGCTTAAAAATGATGAAGAATCCAATGATGTAAAACCTATTACTGAACCGAGCAGTTCAACACGGGCACCGAGTAGGAAAAGGCCTGCTGCTGGTACACTGGTTGTCTGCCCTGCGAGTGTTCTTCGGCAGTGGGCCAGAGAGCTTGATGAGAAAGTTGGAGATGAAAAACTTTCTGTTTTGATTTTTCATGGGGGCAGTAGGACAAAGGATCCTGTTGAACTTGCAAAATATGATGTGGTTCTCACTACATACGCTCTTGTGACTAATGAAGTTCCCAAGCAACCGTTAGTCGAGGATGATGATATTGATGAAAAAGACGGGGACAAGTTTGGCTTATCCTCCGATTTTTCTGTCAATAAAAAGAGGAAAAAGCTATATAATGGAAGTAAGAAGGGTAAAAAAAGTAGAAAGGGAATAGATGGTTCTTCTTTCGATTGTGGCGGCGCTCTTGCAAAAGTAGGTTGGTTTAGGGTTATTCTAGATGAAGCTCAAACAATAAAGAATCATAGGACTCAGATGGCCAGAGCTTGCTGCAGCCTTAGGGCCAAAAGAAGGTGGTGCTTGTCTGGCACACCTATTCAGAATACTATTGATGATTTATATAGCTACTTTAGGTTCCTGAAGTATGATCCTTATGCTGTGTATAAATCATTCTACCATACAATAAAAGTCCCCATTTCCAGAAATTCCATTCAAGGTTACAAAAAACTTCAAGCAGTTTTGAGGGCCATAATGCTACGTCGTACAAAAGGAACTTTGCTTGATGGCAAGCCAATAATCACTTTACCTCCTAAAACAATTAATCTGGAGAAGGTGGATTTCTCCTATGAGGAGCGGTCCTTCTACAAGAAGTTGGAAGCTGATTCGCGTTCTCAATTTAAGGCATATGCGGCTGCTGGCACAGTAAATCAAAACTATGCAAATATTCTTTTAATGCTTTTACGTCTCCGTCAGGCTTGTGATCACCCACTTCTTGTTAAAGATTATAATTCTGATCCTGTTGGGAAAGATTCTGTTGAAATGGCAAAAAAGCTTCCAAGGGAGATGCTGATCAATCTGTTTAGAAGTCTGGAAACAACATCCGCTATATGTTGTGTCTGCAATGATCCACCTGATGACGCTGTTGTTTCGATGTGTGGCCATGTTTTCTGTTATCAATGTGTATCAGAACATTTGACAGGTGATGATAATATGTGCCCTGCAGTTCATTGTAAAGAACAAATTGGTGAAGATCTTGTTTTCTCCAAAGCAACTTTGAGGAGTTGCATCTCTGACGAACTTGGTGGCAGTAGTTCTGAAAATTCAAGTCTTATTGATTATTCACTAGTACAGAACAGTGAGTACAGCTCATCTAAAATCAAAGCCGTCCTTGAGGTTCTGCAGTCAAATTGCAAAGTGAAGACTCCTAGCTTACTGAATTCCTCTGAAGGCAATAGAGACTCACTGCCATCTGATGATTCAGATATTGAAGATTTTGATGCAGATGTCAAGGTTACAAAACACACAAGTAAATATTCAGAGTCCACAACTGGAGGACCGCTAAAGGCTATAATTTTTTCTCAGTGGACTACCATGTTGGACTTGGTTGAGACATCAATGGAGCAGTCTGGCATAATATACAGGAGACTTGATGGTAGGATGACTCTTAGTGCGAGGGACAAAGCTGTTAAGGATTTCAATACTGATCCTGAGATTACGGTTATGCTGATGTCACTAAAAGCAGGAAACCTTGGTTTGAATATGGTTGCTGCATGTCATGTTATTCTTTTGGATCTTTGGTGGAATCCAACTACTGAAGATCAGGCTATTGATCGAGCTCATAGGATTGGACAGACTCGTCCTGTTACTGTGACACGGATCACCATAAAAGATACAGTTGAAGATAGAATACTGGCTCTTCAGGAAGAAAAGAGAAACATGGTGGCATCTGCTTTTGGCGAAGATCATGCTGGCGGTTCTGGAGCTCGGCTTACTGTTGATGATTTGAAATATCTTTTCATGGTTTAG 3132 0.4109 MLDNVDDIHHFIDSTRRLCALVGGWVSGLISKPYTKLVGSAFDGSIFRLAKERENCYLDYMDQQCIYISSSDDELEEIVDPGRILPKWAASERNSDSRRAKSSNASSSNVFSHSQVKPRNQPGPSNGSTSQHQAVNSRISNTNGAGYEKMSSQQAFNRTLPPSFQSSTTRVAPDNKLSNLSSSQLHDAYRSRHHGVGPSTSSEKGYFRDNFSRGNDGDRFMNQNGGIRALPPSLTLGKAITPPFASSSESAYRSGVGDERVPANDERLIYEAALQDISQPLKEADLPAGIMSVPLMRHQKIALYWMLGRETRSLHCLGGILADDQGLGKTISTIALILMQRPLQAKWKTDDSCNHKAEALNLDDDDDNGSIDVEKLKNDEESNDVKPITEPSSSTRAPSRKRPAAGTLVVCPASVLRQWARELDEKVGDEKLSVLIFHGGSRTKDPVELAKYDVVLTTYALVTNEVPKQPLVEDDDIDEKDGDKFGLSSDFSVNKKRKKLYNGSKKGKKSRKGIDGSSFDCGGALAKVGWFRVILDEAQTIKNHRTQMARACCSLRAKRRWCLSGTPIQNTIDDLYSYFRFLKYDPYAVYKSFYHTIKVPISRNSIQGYKKLQAVLRAIMLRRTKGTLLDGKPIITLPPKTINLEKVDFSYEERSFYKKLEADSRSQFKAYAAAGTVNQNYANILLMLLRLRQACDHPLLVKDYNSDPVGKDSVEMAKKLPREMLINLFRSLETTSAICCVCNDPPDDAVVSMCGHVFCYQCVSEHLTGDDNMCPAVHCKEQIGEDLVFSKATLRSCISDELGGSSSENSSLIDYSLVQNSEYSSSKIKAVLEVLQSNCKVKTPSLLNSSEGNRDSLPSDDSDIEDFDADVKVTKHTSKYSESTTGGPLKAIIFSQWTTMLDLVETSMEQSGIIYRRLDGRMTLSARDKAVKDFNTDPEITVMLMSLKAGNLGLNMVAACHVILLDLWWNPTTEDQAIDRAHRIGQTRPVTVTRITIKDTVEDRILALQEEKRNMVASAFGEDHAGGSGARLTVDDLKYLFMV* 1044
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal1g0135 1043 CDD SF2_C_SNF 890 994 - -
Mal1g0135 1043 Gene3D - 390 477 IPR038718 -
Mal1g0135 1043 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 632 1042 IPR027417 -
Mal1g0135 1043 MobiDBLite consensus disorder prediction 358 404 - -
Mal1g0135 1043 ProSiteProfiles Zinc finger RING-type profile. 739 775 IPR001841 -
Mal1g0135 1043 SMART ultradead3 291 600 IPR014001 -
Mal1g0135 1043 PANTHER HELICASE-LIKE TRANSCRIPTION FACTOR CHR28 88 1042 - -
Mal1g0135 1043 Gene3D - 271 353 IPR038718 -
Mal1g0135 1043 Gene3D - 509 636 IPR038718 -
Mal1g0135 1043 MobiDBLite consensus disorder prediction 90 217 - -
Mal1g0135 1043 ProSitePatterns Zinc finger RING-type signature. 754 763 IPR017907 -
Mal1g0135 1043 SMART helicmild6 902 985 IPR001650 -
Mal1g0135 1043 CDD DEXDc_SHPRH-like 295 623 - -
Mal1g0135 1043 Pfam Zinc finger, C3HC4 type (RING finger) 739 775 IPR018957 GO:0046872
Mal1g0135 1043 SMART ring_2 739 777 IPR001841 -
Mal1g0135 1043 Pfam SNF2-related domain 308 700 IPR000330 GO:0005524|GO:0140658
Mal1g0135 1043 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 728 789 IPR013083 -
Mal1g0135 1043 Gene3D - 792 1041 IPR027417 -
Mal1g0135 1043 MobiDBLite consensus disorder prediction 370 386 - -
Mal1g0135 1043 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 285 623 IPR027417 -
Mal1g0135 1043 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 88 1042 - -
Mal1g0135 1043 Pfam Helicase conserved C-terminal domain 890 985 IPR001650 -
Mal1g0135 1043 MobiDBLite consensus disorder prediction 100 186 - -
Mal1g0135 1043 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 872 1038 IPR001650 -
Mal1g0135 1043 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 310 585 IPR014001 -
Mal1g0135 1043 SUPERFAMILY RING/U-box 737 798 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal1g0135 Mal-Chr1 1531338 1540457 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal1g0135 124 943 RAD5 or RAD16-like Gene Family AT1G50410 60.473 0.0 954
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Mal1g0135 SNF2_N 2.6e-67 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal1g0135 - - gmx:100795142 1486.09
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal1g0135 1 1531338 1540457 Mal1g0135 1 1531338 1540457 ECH