Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal1g0126 ATGGGTCGTAAAAAAATAGCTATGAAATACATACAAAATGAGAAATCTCGCAAATCAGCTTTCAAGCAAAGAAAAAAGGGACTAATAAATAAAATGTCTGAGTTCACTATCAAGACCGGAGCAAAAGTTTGCTTGATTGTGTATGATGATGATGGTAATAATGTGGGACCAATAACATGGCCAGAAGACCTTACAGTTGTAAACTCCACACTTCAAGAGTATAAACATCAAAAGATTGAGAAAACTCCTGAGATATTTGATGTCAACAACTACTTTGAAATTAAGAAAGGTATGGTTGAAGCTGAGATTAGAAAAGTGCACAAAGCTATCATCAATACCAAGTATCCAACTTGGAATCCATATTTTATTAACATGGAAGAGAACCAACTCGAAAACTTTATTGCTGCTATAGATGCCAAGATTCATGCTTGTAATCACAAAATTAACATGTTGGAAAGTGAGGTGGTGGAAAAGAATGTTGTTTTGAATCCAAGCCCAATCAGTGTCATACATAGCACCCCTCAGATGAAAAGTGAGATGGTGGAAGAGAATGTTGTTTTGAATCCAAGCCCAATCACTGTCATACATAGCACCCCTCAAATGAAAAGTGAGATCAATCAACCTGACCAATTAATTTGA 639 0.3568 MGRKKIAMKYIQNEKSRKSAFKQRKKGLINKMSEFTIKTGAKVCLIVYDDDGNNVGPITWPEDLTVVNSTLQEYKHQKIEKTPEIFDVNNYFEIKKGMVEAEIRKVHKAIINTKYPTWNPYFINMEENQLENFIAAIDAKIHACNHKINMLESEVVEKNVVLNPSPISVIHSTPQMKSEMVEENVVLNPSPITVIHSTPQMKSEINQPDQLI* 213
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal1g0126 212 Gene3D - 13 95 IPR036879 GO:0003677|GO:0046983
Mal1g0126 212 PANTHER MADS BOX PROTEIN 3 196 - -
Mal1g0126 212 CDD MADS_SRF_like 2 63 IPR033897 GO:0000981|GO:0000987|GO:0045944
Mal1g0126 212 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 53 IPR002100 GO:0003677|GO:0046983
Mal1g0126 212 PANTHER PROTEIN, PUTATIVE-RELATED 3 196 - -
Mal1g0126 212 ProSiteProfiles MADS-box domain profile. 1 52 IPR002100 GO:0003677|GO:0046983
Mal1g0126 212 SUPERFAMILY SRF-like 1 76 IPR036879 GO:0003677|GO:0046983
Mal1g0126 212 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal1g0126 Mal-Chr1 1449024 1449662 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal1g0126 1 142 Type I MADS-box Gene Family AT5G55690 32.877 2.88e-16 73.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Mal1g0126 SRF-TF 4.7e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal1g0126 - - mtr:MTR_4g045977 221.476