Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal1g0113 ATGAAGAGAGAAAGAGAAGTTGATAATAACATAGCCATGGCTAAATACTTGATGTTACTTTCTGGTGGAGGTGGTGATCAAATATTTGATCAAGTGAATTACTCTTCGAATTTCAACAACCGTGTGTTTGAGTGCAAGACATGTAAAAGACAATTTTCGTCGTTTCAAGCATTGGGAGGACACCGTGCGAGCCACAAGAAACCAAGGTTGATGGAGATGAGTAGTGATGGTGATGAACATCATGGTTCAATACTTACACCAACAACAAAGGCTAAAACTCATGAATGTTCAATTTGTGGATTGGAATTTGGAATAGGACAAGCTTTGGGTGGTCACATGAGGCGACACAGAAGAACAGCATCATCATCAAAAGCTAATAATTCAAATGGAAACATGCACAATTTTATGACTACTAGTAGTAGCAATAGTGGTTGCAGTACTATTGATAATAGTACTAATACTAATTCAGCAAAGAAGAATAAGGGGAGCACCAATAGATTTTTGTTTCTGGATTTGAATTTGACACCTTTAGAGAATGATTTGAAGTTTTTGAAGATTGGACAATCAGCTCCTAGTTTGGTGGATTGTTTCAATTGA 597 0.3685 MKREREVDNNIAMAKYLMLLSGGGGDQIFDQVNYSSNFNNRVFECKTCKRQFSSFQALGGHRASHKKPRLMEMSSDGDEHHGSILTPTTKAKTHECSICGLEFGIGQALGGHMRRHRRTASSSKANNSNGNMHNFMTTSSSNSGCSTIDNSTNTNSAKKNKGSTNRFLFLDLNLTPLENDLKFLKIGQSAPSLVDCFN* 199
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal1g0113 198 ProSiteProfiles Zinc finger C2H2 type domain profile. 94 121 IPR013087 -
Mal1g0113 198 ProSiteProfiles Zinc finger C2H2 type domain profile. 43 70 IPR013087 -
Mal1g0113 198 Pfam C2H2-type zinc finger 42 68 - -
Mal1g0113 198 Pfam C2H2-type zinc finger 94 118 - -
Mal1g0113 198 Gene3D Classic Zinc Finger 41 116 - -
Mal1g0113 198 PANTHER ZINC FINGER PROTEIN ZAT5 12 192 - -
Mal1g0113 198 SUPERFAMILY beta-beta-alpha zinc fingers 41 116 IPR036236 -
Mal1g0113 198 ProSitePatterns Zinc finger C2H2 type domain signature. 96 116 IPR013087 -
Mal1g0113 198 PANTHER ZINC FINGER PROTEIN ZAT12 12 192 - -
Mal1g0113 198 SMART c2h2final6 94 116 IPR013087 -
Mal1g0113 198 SMART c2h2final6 43 65 IPR013087 -
Mal1g0113 198 ProSitePatterns Zinc finger C2H2 type domain signature. 45 65 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal1g0113 Mal-Chr1 1315926 1316522 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal1g0113 1 184 C2H2 Transcription Factor Family AT2G37430 41.146 3.49e-35 120
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Mal1g0113 zf-C2H2_6 7e-10 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal1g0113 - - gmx:100816598 193.356
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal1g0113 1 1315926 1316522 Mal1g2937 1 42437072 42437578 ECH
Mal1g0113 1 1315926 1316522 Mal1g0113 1 1315926 1316522 ECH