Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal1g0088 ATGATGCAGCCTTACGGAGATGTTGATTCCACTTTGAGATCCATCGCCGGCCGTGCTGAAGGTTTCGGCCGCCTCGCCATCGGTGGTCTCCACGGTTCTCTCTATTTGGTTACCTCCCTTTCAGATGATGGTCCTGGTTCCCTTCGCGAAGGATGTCGTAGAAAGGAGCCGCTATGGATTGTTTTTGAAGTTTCGGGTACAATTCATCTTTCATCATACCTAAGTGTGTCGTCTCATAAGACAATAGATGGAAGAGGCCAGAGGATTAAATTAACTGGGAAAGGCTTAAGGCTGAAAGAATGTGAGAACATAATTGTATGCAACCTTGAGTTTGAGGGTGGCAGGGGTCATGATGTAGATGGGATTCAAATAAAACCCAATTCTCGGAATATATGGATAGACCGCTGCAGCCTCCGAGATTATGATGACGGTCTTATAGACATCACAAGACAAAGCACGGATATCACTATATCTAGATGTCACTTTGCACAACATGACAAGACCATGCTAATTGGAGCTGACCCATCACACGTCGGCGATAGATGCATCCGGGTGACGATTCATCATTGTTTCTTTGATGGAACACGGCAAAGACACCCTCGTGTGAGATTTGGAAAAGTTCATCTGTACAACAACTACACCAGAAACTGGGGAATATATGCAGTTTGTGCTAGTGTTGAGTCCCAGATATACTCACAATGCAACGTATATGAGGCAGGAACAAAGAAAAAGACTTTTGAATTTTATACCGAGAAGGCGGCAGACAAAGAAGAGCAGAAGTCTGGCTTCATCATATCTGAAGGAGATATGTTTCTGAATGGTGCTCAGCCATGCTTGCCAATAGAATCTAAAGGAGAATCCATTTTCCATCCTAGTGAATATTACCCAACTTGGACAATGGAAGCAGCTACACATTCTCTCAGAGAGGTTGCCCAGTTATGTACAGGTTGGCAGTCCATCAGTAGGCCAATAGACCATATTGTATGA 987 0.4428 MMQPYGDVDSTLRSIAGRAEGFGRLAIGGLHGSLYLVTSLSDDGPGSLREGCRRKEPLWIVFEVSGTIHLSSYLSVSSHKTIDGRGQRIKLTGKGLRLKECENIIVCNLEFEGGRGHDVDGIQIKPNSRNIWIDRCSLRDYDDGLIDITRQSTDITISRCHFAQHDKTMLIGADPSHVGDRCIRVTIHHCFFDGTRQRHPRVRFGKVHLYNNYTRNWGIYAVCASVESQIYSQCNVYEAGTKKKTFEFYTEKAADKEEQKSGFIISEGDMFLNGAQPCLPIESKGESIFHPSEYYPTWTMEAATHSLREVAQLCTGWQSISRPIDHIV* 329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal1g0088 328 SUPERFAMILY Pectin lyase-like 16 278 IPR011050 -
Mal1g0088 328 SMART amb_all 65 243 IPR002022 -
Mal1g0088 328 Gene3D - 5 313 IPR012334 -
Mal1g0088 328 PRINTS Pollen allergen Amb family signature 220 239 IPR018082 -
Mal1g0088 328 PRINTS Pollen allergen Amb family signature 18 35 IPR018082 -
Mal1g0088 328 PRINTS Pollen allergen Amb family signature 198 217 IPR018082 -
Mal1g0088 328 PANTHER PECTATE LYASE 18-RELATED 2 324 IPR045032 GO:0030570
Mal1g0088 328 PANTHER PECTATE LYASE 2 324 - -
Mal1g0088 328 Pfam Pectate lyase 73 236 IPR002022 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal1g0088 Mal-Chr1 1060288 1062834 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal1g0088 42 328 Polysaccharide Lyase AT3G55140 80.836 0.0 505
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal1g0088 K01728 - gmx:100802068 612.838