Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal1g0053 ATGGCATCAACTTCTTGTGTTAGTAAGAATTCATTACCCATGAAAGAGACAGCTTCAAGCTATGGTGAATATCCTCCTCCTATGGCAACATATGAGGAGGTTGTAGACAATCCCAAGCTCTTCATGGTTAGCTTGGAGAAGCTCCACGCTTTAATGGGCACCAAGTTCATGATTCCCGTTATTGGGGGAAGGGAATTGGATTTACATCGCCTCTTTGTTGAAGTGACTTCTCGTGGAGGGATTGAGAAAATCATTAAAGATAGAAAATGGAAAGATGTAACTTTAGTTTTCAATTTTCCCTCAACTGCTACAAATGCTTCTTTTGTGGTGCGGAAGTACTATACTTCATTACTCTACCATTATGAACAAATCTATTATTTTAAAGCTCGTAAATGGACCCGAACAACTTCCGATGTTTTGCAGAATCAATCATCCATCCAAGTTCCTGCTCCAAAGATGCAGTTTTTGCATCCTTCACCCCAAGTTCAACCAGCTGCTGCCTTTCAACAGTTAAATGTTAATGCTGCACTGCCTGAAGCAACGGGATCATCTTCGGCAGGATCTCAGGTTCTTGGGGTCATTGATGGGAAATTTGATAGTGGTTATCTAGTTACTGTCACAATTGGTTCGGAGAAACTCAAAGGCGTACTTTATCAAGCTCCACAAAATCCCGTGTTGCCAGCATCCCACCATAGTGCTTCTGCTAACAACAACATCAACGTGACTGCCCCTGTCGGTGTCCATCGTCGCCGACGCAGGAAGAAATCAGAAATGAAAAAGAGAGATCCTGCTCACCCAAAAACAAACAGAAGTGGATACAATTTCTTCTTTGCAGAACAGCATGCAAGGCTAAAACCTCTCAACCAAGGGAAGGACAGAGAGATTAGTAGGACCATTGGTGAACTCTGGAACAAGTTACCTGAATCAGAAAAAGCAGTTTATCAAGATAAAGCCGTGAAGGACAAAGAGAGGTACAGAACAGAAATGGAGTATTACCGTGAGAAGTTGAAGAATGATCAAGTGATCAGTGATGCTGTGCCACTTCAACAGCGACTTCCTGTACCAGATACTGACATGTTGAATGCTGAGGCAGATTCTCTTCAAACTCCGGAGCAGAGTTGTTCGGGTGGAAGTGATGACTATGAAGATGATAAAGCGATGGAGAAGGATTTTAGGGTGGATGGATTGCCTGTTATAGGAGTTGGTGCTGAATCTATGAATTCAGTAGAGAAGGGGGGTTTATGA 1245 0.4273 MASTSCVSKNSLPMKETASSYGEYPPPMATYEEVVDNPKLFMVSLEKLHALMGTKFMIPVIGGRELDLHRLFVEVTSRGGIEKIIKDRKWKDVTLVFNFPSTATNASFVVRKYYTSLLYHYEQIYYFKARKWTRTTSDVLQNQSSIQVPAPKMQFLHPSPQVQPAAAFQQLNVNAALPEATGSSSAGSQVLGVIDGKFDSGYLVTVTIGSEKLKGVLYQAPQNPVLPASHHSASANNNINVTAPVGVHRRRRRKKSEMKKRDPAHPKTNRSGYNFFFAEQHARLKPLNQGKDREISRTIGELWNKLPESEKAVYQDKAVKDKERYRTEMEYYREKLKNDQVISDAVPLQQRLPVPDTDMLNAEADSLQTPEQSCSGGSDDYEDDKAMEKDFRVDGLPVIGVGAESMNSVEKGGL* 415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal1g0053 414 ProSiteProfiles ARID domain profile. 35 126 IPR001606 GO:0003677
Mal1g0053 414 SUPERFAMILY ARID-like 34 132 IPR036431 GO:0003677
Mal1g0053 414 CDD HMGB-UBF_HMG-box 266 330 - -
Mal1g0053 414 Pfam HMG (high mobility group) box 266 333 IPR009071 -
Mal1g0053 414 MobiDBLite consensus disorder prediction 246 260 - -
Mal1g0053 414 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 266 333 IPR009071 -
Mal1g0053 414 SMART bright_3 36 127 IPR001606 GO:0003677
Mal1g0053 414 SMART ARID_2 32 122 - -
Mal1g0053 414 Gene3D High mobility group box domain 250 346 IPR036910 -
Mal1g0053 414 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 3 388 - -
Mal1g0053 414 SMART hmgende2 265 334 IPR009071 -
Mal1g0053 414 PANTHER HIGH MOBILITY GROUP B PROTEIN 15 3 388 - -
Mal1g0053 414 Gene3D - 29 144 IPR036431 GO:0003677
Mal1g0053 414 CDD ARID_HMGB9-like 37 122 IPR045303 GO:0003677
Mal1g0053 414 MobiDBLite consensus disorder prediction 363 383 - -
Mal1g0053 414 SUPERFAMILY HMG-box 254 338 IPR036910 -
Mal1g0053 414 Pfam ARID/BRIGHT DNA binding domain 39 122 IPR001606 GO:0003677
Mal1g0053 414 MobiDBLite consensus disorder prediction 246 273 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal1g0053 Mal-Chr1 637593 641834 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal1g0053 1 365 ARID Transcription Factor Family AT1G04880 60.267 3.46e-135 393
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Mal1g0053 ARID 2e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal1g0053 - - gmx:100807028 587.03