Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal1g0020 ATGATTTCAAACTCCAGGATAAATGGAAGCCATGAAACTTCACAATCTACTGAAAGAAATTATGGTGCAAAACGTGGGAGAGAGGATGTTGCAGGGTATCAAAAGTTCAAAGGTGTTGTGCCTCAACAAAATGGACATTGGGGTGCACAAATATATGCAAATCACCAAAGAATATGGTTAGGGACATTCAAATCTGAAAGAGATGCTGCCATGGCTTACGACAGCGCCACCATTAAGCTCAGAAGCGGAGAAAGCCATAGAAACTTTGCGTGGAATAACCAAACAGTTCAAGAACCTCTGTTTCAAAGTCAATATAGCATGGAAACAATTATGATCATGATTAGAAATGGCACATACCCCTCTAATTTTGCAACATTTCTTAGAAATCAAAGCCTGCTGCAAGGTGGCAAAGAAGGTGGTGTTATTGGGGTGAAGGGTGAGGAACAATTTTCTTGCACACAACTTTTTGAAAAAGAATTAACACCAAGTGATGTTGGTAAACTGAATAGGCTTGTCATCCCCAAAAAACATGCAGTTACCTGTTTTCCTTTGGTTTGTGGCAATGACGTGGAAGTTGTGTTTTATGACAAACTCATGCGATTGTGGAAGTTTCGATATTGCTATTGGAAGAGCAGCCAAAGCTATGTGTTCACTAGAGGATGGAATAGGTTTGTGAAGGATAAGAAATTGAAGGCCAAAGACACAATTGCATTTTATAGGTGTGAACCTATAAATGGGGGAGAGGGACGACCGTTTTCATTGATTGATGTAATCTATAATGATGGTGGTGATAGAAAAATACATTCTTTTGAAGATGATGACAAGGGTGGAGGAGATACCAAACAAATTTTGGGAGTTTGCAATGAAGTGGATGATGATCAAGTTACTCGAGGTAGAATAGATTTGAATGAGTTTCATTCCACATATAGTAATAATAATAATGCACATGGACATGGAGGCTTAAGGCTCTTTGGCGTAAGCATCAGCTAA 990 0.3899 MISNSRINGSHETSQSTERNYGAKRGREDVAGYQKFKGVVPQQNGHWGAQIYANHQRIWLGTFKSERDAAMAYDSATIKLRSGESHRNFAWNNQTVQEPLFQSQYSMETIMIMIRNGTYPSNFATFLRNQSLLQGGKEGGVIGVKGEEQFSCTQLFEKELTPSDVGKLNRLVIPKKHAVTCFPLVCGNDVEVVFYDKLMRLWKFRYCYWKSSQSYVFTRGWNRFVKDKKLKAKDTIAFYRCEPINGGEGRPFSLIDVIYNDGGDRKIHSFEDDDKGGGDTKQILGVCNEVDDDQVTRGRIDLNEFHSTYSNNNNAHGHGGLRLFGVSIS* 330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal1g0020 329 CDD B3_DNA 155 240 IPR003340 GO:0003677
Mal1g0020 329 SMART rav1_2 35 96 IPR001471 GO:0003700|GO:0006355
Mal1g0020 329 PANTHER AP2/ERF AND B3 DOMAIN TRANSCRIPTION FACTOR 4 329 - -
Mal1g0020 329 MobiDBLite consensus disorder prediction 1 20 - -
Mal1g0020 329 CDD AP2 34 92 IPR001471 GO:0003700|GO:0006355
Mal1g0020 329 Gene3D AP2/ERF domain 34 91 IPR036955 GO:0003700|GO:0006355
Mal1g0020 329 ProSiteProfiles AP2/ERF domain profile. 35 90 IPR001471 GO:0003700|GO:0006355
Mal1g0020 329 ProSiteProfiles B3 DNA-binding domain profile. 156 258 IPR003340 GO:0003677
Mal1g0020 329 SUPERFAMILY DNA-binding domain 35 92 IPR016177 GO:0003677
Mal1g0020 329 Pfam AP2 domain 35 81 IPR001471 GO:0003700|GO:0006355
Mal1g0020 329 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 4 329 IPR044800 GO:0003700
Mal1g0020 329 SMART B3_2 156 248 IPR003340 GO:0003677
Mal1g0020 329 MobiDBLite consensus disorder prediction 1 26 - -
Mal1g0020 329 Pfam B3 DNA binding domain 156 241 IPR003340 GO:0003677
Mal1g0020 329 SUPERFAMILY DNA-binding pseudobarrel domain 154 242 IPR015300 -
Mal1g0020 329 Gene3D - 151 257 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal1g0020 Mal-Chr1 315018 316007 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal1g0020 31 328 RAV Transcription Factor Family AT1G50680 49.080 2.48e-94 282
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Mal1g0020 B3 1.8e-25 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal1g0020 K09287 - gmx:102660503 370.163