Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Mal1g0018 | ATGGATCGCAAGAGGGGAAGGCCTGAAGCAGCAGCTTCCTTCAATGGCAACGGCAACGGCAATGGCGCCCGAAAGAGAGGAAGATCAGAAACGGAGTCCTTTCAATCTGGTTTAGGAAGCAAATCCAAGCCTTGCACAAAGTTTTTCAGCACCTCTGGATGTCCATTTGGTGAGGGATGCCATTTCCTGCATTACGTTCCTGGGGGCTTTAAAACTGTCTCTCAGATGATCAATGTTGGTAGCAATCCTGCTATTCCACCAATTGGTAGAAATCCAAATGTTCCACCATCGTTCCCAGACGGTTCTTCTCCACCAGTTGTTAAGACCCGATTGTGCAACAAGTTCAATACAGCTGAAGGTTGCAAATTTGGTGATAAATGTCACTTTGCCCATGGTGAGTGGGAGCTTGGCAGGCCCACAGTCCCTGCATATGAAGATACTCGCGCCATGGGACAAATGCAAAGCAGCAGGGTTGGTGGGAGAATTGAGCCCCCACCTCCAGCTCATGGAGCTGCTGCCGGTTTTGGAGTCTCGGCCACTGCAAAAATTAGTATCAATGCTGCCCTTGCTGGAGCTATCATTGGAAAAAATGGTGTTAACTCCAAGCAAATCTGTCGCATAACAGGTGCTAAACTTTCCATTAGGGAACATGACTCAGATCCTAACCTTAAAAATATTGAGCTTGAAGGCAGTTTTGATCAGATCAAACAAGCCAGCGCCATGGTTCATGACCTTATTCTAAATGTGAGTTCGGTCTCTGGACCTCCAGGGAAAAACATTACTTCACAGACTTCTGCCCCTGCAAACAACTTCAAGACCAAGCTGTGTGAAAACTTTACCAAAGGATCCTGCACTTTTGGGGAAAGGTGCCACTTCGCCCATGGAGCAGATGAATTACGCAAACCTGGATTGTGA | 915 | 0.4732 | MDRKRGRPEAAASFNGNGNGNGARKRGRSETESFQSGLGSKSKPCTKFFSTSGCPFGEGCHFLHYVPGGFKTVSQMINVGSNPAIPPIGRNPNVPPSFPDGSSPPVVKTRLCNKFNTAEGCKFGDKCHFAHGEWELGRPTVPAYEDTRAMGQMQSSRVGGRIEPPPPAHGAAAGFGVSATAKISINAALAGAIIGKNGVNSKQICRITGAKLSIREHDSDPNLKNIELEGSFDQIKQASAMVHDLILNVSSVSGPPGKNITSQTSAPANNFKTKLCENFTKGSCTFGERCHFAHGADELRKPGL* | 305 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Mal1g0018 | 304 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 271 | 295 | IPR000571 | GO:0046872 | |
| Mal1g0018 | 304 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 108 | 133 | IPR000571 | GO:0046872 | |
| Mal1g0018 | 304 | SUPERFAMILY | Eukaryotic type KH-domain (KH-domain type I) | 176 | 250 | IPR036612 | GO:0003723 | |
| Mal1g0018 | 304 | SUPERFAMILY | CCCH zinc finger | 270 | 300 | IPR036855 | GO:0046872 | |
| Mal1g0018 | 304 | ProSiteProfiles | Type-1 KH domain profile. | 178 | 242 | - | - | |
| Mal1g0018 | 304 | ProSiteProfiles | Zinc finger C3H1-type profile. | 39 | 67 | IPR000571 | GO:0046872 | |
| Mal1g0018 | 304 | SUPERFAMILY | CCCH zinc finger | 40 | 65 | IPR036855 | GO:0046872 | |
| Mal1g0018 | 304 | MobiDBLite | consensus disorder prediction | 1 | 42 | - | - | |
| Mal1g0018 | 304 | CDD | KH-I | 180 | 243 | - | - | |
| Mal1g0018 | 304 | ProSiteProfiles | Zinc finger C3H1-type profile. | 107 | 134 | IPR000571 | GO:0046872 | |
| Mal1g0018 | 304 | Gene3D | - | 101 | 138 | - | - | |
| Mal1g0018 | 304 | Gene3D | - | 267 | 301 | - | - | |
| Mal1g0018 | 304 | PANTHER | ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 52 | 4 | 302 | - | - | |
| Mal1g0018 | 304 | SUPERFAMILY | CCCH zinc finger | 104 | 137 | IPR036855 | GO:0046872 | |
| Mal1g0018 | 304 | Pfam | RNA-binding, Nab2-type zinc finger | 44 | 64 | - | - | |
| Mal1g0018 | 304 | SMART | c3hfinal6 | 108 | 133 | IPR000571 | GO:0046872 | |
| Mal1g0018 | 304 | SMART | c3hfinal6 | 270 | 296 | IPR000571 | GO:0046872 | |
| Mal1g0018 | 304 | SMART | c3hfinal6 | 39 | 66 | IPR000571 | GO:0046872 | |
| Mal1g0018 | 304 | PANTHER | CCCH ZINC FINGER/TIS11-RELATED | 4 | 302 | IPR045877 | GO:0003729 | |
| Mal1g0018 | 304 | ProSiteProfiles | Zinc finger C3H1-type profile. | 270 | 297 | IPR000571 | GO:0046872 | |
| Mal1g0018 | 304 | SMART | kh_6 | 177 | 247 | IPR004087 | GO:0003676 | |
| Mal1g0018 | 304 | Pfam | KH domain | 181 | 243 | IPR004088 | GO:0003723 | |
| Mal1g0018 | 304 | Gene3D | K Homology domain, type 1 | 173 | 266 | IPR036612 | GO:0003723 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Mal1g0018 | Mal-Chr1 | 301690 | 305013 | Transposed |
Transcription factors information
| Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
|---|---|---|---|---|---|---|---|
| TF | C3H | Mal1g0018 | KH_1 | 2.6e-10 | CL0007 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Mal1g0018 | - | - | gmx:100818781 | 524.628 |