Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal1g0006 ATGGCGGCTGCTTCTGCATTCAATGTTACTACAGCACCGCCGCTTTTCTCGCTGTCAAATGTTGTTACAGATAGTAGAATCAGAGCTCTGAACCCTAACCCTAACCCTAGAAGAAGTATCTCCGTCGGGGTGGGTGTGAAACTAGCACTACCACGGCAACAGAGTATTGTTGCTGCTCCGGCGACTGCGAGACTGAAAGTGAAGGCAGTGGGCAGTGGTAGTTCATCATCTGAGGAGGAAGTAATAGTACAGTCAAAAGTGACTCACAAAGTATTCTTTGATATCAGTATTGGAAATCCAGTTGGGAAGCTGGTGGGAAGGATTGTGATTGGACTCTTTGGTGACGATGTCCCCCAAACTGTTGAGAACTTCCGTGCCCTTTCCACCGGTGAGAAGGGCTTTGGCTACAAGTCCTCTACCTTCCATCGTGTCATCAAGGATTTCATGATTCAAGGAGGAGACTTTGACAAAGGAAATGGAACTGGAGGCAAAAGTATATATGGTCGTACTTTCAAAGATGAGAATTTTAATCTGTCTCATACTGGACCAGGAGCTGTTAGCATGGCAAATGCAGGTCCTAACACGAATGGGAGTCAGTTTTTCATATGCACTGTCAAGACACCGTGGCTGGATCAGAGACATGTTGTATTCGGCCAAGTTTTGGAAGGCATGGACATTGTTAGGTTGATTGAATCACAAGACACTGATCGTGGCGATCGTCCCCGAAAGAAGGTGGTTATCAGTGACTGTGGTGAGCTTCCAATTGCTTGA 771 0.4643 MAAASAFNVTTAPPLFSLSNVVTDSRIRALNPNPNPRRSISVGVGVKLALPRQQSIVAAPATARLKVKAVGSGSSSSEEEVIVQSKVTHKVFFDISIGNPVGKLVGRIVIGLFGDDVPQTVENFRALSTGEKGFGYKSSTFHRVIKDFMIQGGDFDKGNGTGGKSIYGRTFKDENFNLSHTGPGAVSMANAGPNTNGSQFFICTVKTPWLDQRHVVFGQVLEGMDIVRLIESQDTDRGDRPRKKVVISDCGELPIA* 257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal1g0006 256 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 105 251 IPR002130 GO:0000413|GO:0003755
Mal1g0006 256 Gene3D - 75 255 IPR029000 -
Mal1g0006 256 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 92 252 IPR002130 GO:0000413|GO:0003755
Mal1g0006 256 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 112 127 IPR002130 GO:0000413|GO:0003755
Mal1g0006 256 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 141 153 IPR002130 GO:0000413|GO:0003755
Mal1g0006 256 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 199 211 IPR002130 GO:0000413|GO:0003755
Mal1g0006 256 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 184 199 IPR002130 GO:0000413|GO:0003755
Mal1g0006 256 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 212 227 IPR002130 GO:0000413|GO:0003755
Mal1g0006 256 SUPERFAMILY Cyclophilin-like 86 253 IPR029000 -
Mal1g0006 256 CDD cyclophilin_ABH_like 89 251 - -
Mal1g0006 256 PANTHER PHOTOSYNTHETIC NDH SUBUNIT OF LUMENAL LOCATION 5, CHLOROPLASTIC 57 253 - -
Mal1g0006 256 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 57 253 - -
Mal1g0006 256 ProSitePatterns Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 136 153 IPR020892 GO:0003755|GO:0006457
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal1g0006 Mal-Chr1 89644 90972 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal1g0006 106 247 U-box Gene Family AT5G67530 46.154 2.29e-31 119
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal1g0006 K03768 - gmx:100796688 347.436