Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal1g0004 ATGGGTTGTTTTTCGTGTTTCGATTCGAAGGAGGATGAGAAGCTGAATCCTCAGCAGCAGCATCAGCATCAGGAAACCCATCATCATCACGATCATAATCATAATCATATTTCCAGATTGCACTCTTCTGGACCCTCTGCAGTAGGAGCAGAGAAGCTGCGGTCAACAAGTAATGGATCCTCCAAAAGGGAATTGCAATTCCCTGCTGCTCTCAAAGACGGACCACCTGGTCAAATTGCCGCTCAAACTTTTACTTTCCGTGAACTTGCTGCTGCAACCAAAAATTTCAGGCCTCAGTCCTTTTTAGGGGAAGGTGGTTTTGGAAGGGTCTACAAGGGACGCCTCGAAACCACGGGTCAGGCTGTTGCTGTTAAACAGTTAGACAGAAACGGTCTCCAGGGTAATCGGGAGTTCCTTGTCGAGGTTCTCATGCTCAGTCTTCTACACAGCCCTAACCTTGTCAGTCTCATTGGATACTGTGCCGATGGTGACCAACGCCTCCTAGTTTATGAATTTATGCCATTGGGATCATTGGAAGACCATCTTCACGATCTCCCCCCTGATAAGGAACCATTAGATTGGAACACTAGAATGAAAATAGCTGCTGGTGCCGCAAAAGGATTGGAATACCTACACGACAAGGCAAATCCTCCAGTAATTTATAGGGACTTCAAGTCATCTAATATATTACTTGATGAAGGTTATCATCCAAAGCTTTCTGACTTTGGTTTGGCAAAGCTTGGTCCTGTTGGGGACAAATCACATGTTTCTACTCGTGTTATGGGAACTTATGGTTACTGTGCTCCTGAGTATGCTATGACTGGACAACTGACAGTAAAATCTGACGTATATAGTTTTGGGGTAGTCTTCTTGGAGCTAATTACTGGCCGTAAAGCCATCGACAGCACCCGGCCCCATGGAGAACAAAACCTTGTCACATGGGCACGGCCTTTGTTCAATGACCGTAGGAAGTTTTCAAAGTTGGCAGATCCACGGTTGCAGGGGCGTTATCCCATGCGGGGTCTTTACCAAGCTCTAGCTGTGGCATCAATGTGCATTCAAGAACAGGCAGCTGCACGTCCTCTGATTGGGGATGTGGTGACGGCCCTCTCGTATCTCGCCAACCAGGCACATGACACTAACAATGCTGGCAATGGTAATAATAAGGGAACTGGTGATGAGAAAAGGAATAGAGATGATAAAGGTGGAAGAATATTAAAAAATGATGAAGGTGGAGGATCTGGTCGCAGATGGGATTTGGAAGGATCTGAGAAAGATGACTCCCCGCGTGAAACTGCAAGAATGTTAAACAGGGATCTTGATAGAGAACGTGCTGTGGCTGAAGCCAAGATGTGGGGAGAGAACTTGAGAGAAAAAAGACGACAGAGTGTGCAGGGCAGTTTTGATGCTTCTAATGCCTAG 1422 0.4634 MGCFSCFDSKEDEKLNPQQQHQHQETHHHHDHNHNHISRLHSSGPSAVGAEKLRSTSNGSSKRELQFPAALKDGPPGQIAAQTFTFRELAAATKNFRPQSFLGEGGFGRVYKGRLETTGQAVAVKQLDRNGLQGNREFLVEVLMLSLLHSPNLVSLIGYCADGDQRLLVYEFMPLGSLEDHLHDLPPDKEPLDWNTRMKIAAGAAKGLEYLHDKANPPVIYRDFKSSNILLDEGYHPKLSDFGLAKLGPVGDKSHVSTRVMGTYGYCAPEYAMTGQLTVKSDVYSFGVVFLELITGRKAIDSTRPHGEQNLVTWARPLFNDRRKFSKLADPRLQGRYPMRGLYQALAVASMCIQEQAAARPLIGDVVTALSYLANQAHDTNNAGNGNNKGTGDEKRNRDDKGGRILKNDEGGGSGRRWDLEGSEKDDSPRETARMLNRDLDRERAVAEAKMWGENLREKRRQSVQGSFDASNA* 474
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal1g0004 473 ProSitePatterns Serine/Threonine protein kinases active-site signature. 219 231 IPR008271 GO:0004672|GO:0006468
Mal1g0004 473 SUPERFAMILY Protein kinase-like (PK-like) 81 368 IPR011009 -
Mal1g0004 473 ProSitePatterns Protein kinases ATP-binding region signature. 102 125 IPR017441 GO:0005524
Mal1g0004 473 MobiDBLite consensus disorder prediction 7 26 - -
Mal1g0004 473 Pfam Protein kinase domain 99 304 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mal1g0004 473 MobiDBLite consensus disorder prediction 49 63 - -
Mal1g0004 473 Gene3D Phosphorylase Kinase; domain 1 80 172 - -
Mal1g0004 473 PANTHER SERINE/THREONINE-PROTEIN KINASE PBS1 1 468 - -
Mal1g0004 473 MobiDBLite consensus disorder prediction 1 63 - -
Mal1g0004 473 PANTHER OS07G0668900 PROTEIN 1 468 - -
Mal1g0004 473 Gene3D Transferase(Phosphotransferase) domain 1 173 397 - -
Mal1g0004 473 MobiDBLite consensus disorder prediction 378 439 - -
Mal1g0004 473 CDD STKc_IRAK 102 370 - -
Mal1g0004 473 MobiDBLite consensus disorder prediction 391 439 - -
Mal1g0004 473 ProSiteProfiles Protein kinase domain profile. 96 373 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal1g0004 Mal-Chr1 64377 68811 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal1g0004 1 461 Glycoside Hydrolase AT3G07070 54.881 3.91e-168 478
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-1 Mal1g0004 Pkinase 9.1e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal1g0004 K13430 - tcc:18608901 784.252
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal1g0004 1 64377 68811 Mal1g2979 1 43253752 43260983 ECH
Mal1g0004 1 64377 68811 Mal1g2978 1 43237280 43241519 ECH
Mal1g0004 1 64377 68811 Mal1g0004 1 64377 68811 ECH