Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g3436 ATGGCTTCAAATCACGTATCAGCTGCTGCAGGAACAACCAATGATGCTTTATATAAGGAACTGTGGCATGCTTGTGCTGGACCCCTTGTCACTCTCCCTCGTGAAGGGGAGAGAGTTTATTACTTCCCACAAGGTCATATGGAACAGCTTGAGGCATCTATGAATCAGGGATTAGAGCATCAAATGCCTTCCTTTAATCTGCCTTGTAAAATATTATGTAAAGTGGTCAATATTCATCTTCGGGCTGAGCCTGAAACAGACGAAGTATATGCTCAGATAACTTTGCTTCCTGAAACAGATCAAAGTGAGGTGGCAAGCCCAGACGAGCCTCTGCCTGAACCTACAAGGTGTACAGTCCATTCATTTTGCAAGACACTTACTGCTTCTGACACTAGCACTCACGGAGGTTTCTCTGTTCTTCGAAGACACGCGGATGATTGTCTGCCACCACTGGATATGACCCAGCAGCCACCATGGCAAGAATTGGTTGCAACTGATTTGCATGGGAATGAATGGCATTTTCGGCATATTTTTCGAGGGCAACCCAGGCGCCACTTACTGACCACTGGGTGGAGTGTCTTTGTCAGTTCAAAAAAATTAGTGGCTGGTGATGCATTTATATTCTTAAGGGGTGAAAATGGAGAGCTCCGAGTTGGAGTCAGGAGGCTCATGAGACAGCAAAGCAACATGCCATCTTCTGTTATTTCCAGTCACAGTATGCATCTTGGTGTTTTGGCCACAGCATCTCATGCCATTGCCACTGGCACATTGTTTTCTGTATTTTACAAGCCCAGAACAAGCCGGTCAGAGTTTATTGTGAGCGTCAATAAGTATCTTGAAGCTCGAAATCATAAACTTTCTGTTGGGATGAGATTCAAAATGAGATTCGAGGGTGAAGAAGTTCCTGAAAGAAGGTTCAGTGGTACAATTGTGGGTGTTGAATATAATAATTCATCTGTCTGGGCTGATTCCGAGTGGCGATCATTAAAGGTACAATGGGATGAACCATCATCAATTTTGCGTCCTGATAGAGTTTCTCCATGGGAATTGGAGCCACTTGTGTCTACCCCTCCTGCGAACTCCCAGCCAACCCCAAGAAACAAGAGATCACGGCCTCCCGTTCTACCTTCGACAATTCCAGATTCTTCTCAAGGCGTATGGAAATCACCAGTTGATTCTCCACCTTTCTCTTATCGTGACCCTCAACATGGACGAGACCTCTATGCATCACCCAAATTCAATTCTACTGCAACTAGCTTTTTTTGTTTTGGTGGGAATAACTCTGCTTCCAACAAGTCAACATATTGGTCTACTAGGATGGAAAACTCAACAGAAACTTTTTCACCTATAGCTCTTAAAGAATCTGGAGAAAAGAGACAAGGCACTGGAAATGGCTGTAGGCTCTTTGGGATTCAGCTACTTGAGAATTCTAATGCAGAAGAAAGTTTGCCAACAGTCACTTTGTCAGGAAGGTTGGGTGATGACCAGTCCATTCCATCTTTGGATGCTGAGTCTGACCAGCATTCTGAACCATCAAATGTTAATCGATCTGATATCCCTTCAGTAAGTTGTGACGCTGAAAAATCATGCCTGCGGTCTCCCCAGGAGTCACAAAGCAGGCAAATACGAAGCTGCACCAAGGTTCACATGCAAGGTATGGCTGTTGGAAGGGCTGTGGACTTAACACAGTTTGATGGATATGAGGACCTGCTTAGGAAATTGGAAGAGATGTTTGACATCAAGGGTGAGCTCTGTGGTTCAGCAAAAAAATGGCAGGTTGTCTACACCGACAATGAAGATGATATGATGATGGTTGGAGATGATCCGTGGCTTGAATTTTGTAGCGTTGTGAGGAAAATTTTCATCTACACAGCAGAGGAGGTGAAGAAGCTTTCACCTAAAATAGGACTTCCCATGAATGATGAAGGTAAACCAAGCAAACTGGATTCAGAAGCCGTAGTCAATCCTGAGGACCAGTCGTCTGTTGTGGGGCCTAGTTGCTAA 2004 0.4456 MASNHVSAAAGTTNDALYKELWHACAGPLVTLPREGERVYYFPQGHMEQLEASMNQGLEHQMPSFNLPCKILCKVVNIHLRAEPETDEVYAQITLLPETDQSEVASPDEPLPEPTRCTVHSFCKTLTASDTSTHGGFSVLRRHADDCLPPLDMTQQPPWQELVATDLHGNEWHFRHIFRGQPRRHLLTTGWSVFVSSKKLVAGDAFIFLRGENGELRVGVRRLMRQQSNMPSSVISSHSMHLGVLATASHAIATGTLFSVFYKPRTSRSEFIVSVNKYLEARNHKLSVGMRFKMRFEGEEVPERRFSGTIVGVEYNNSSVWADSEWRSLKVQWDEPSSILRPDRVSPWELEPLVSTPPANSQPTPRNKRSRPPVLPSTIPDSSQGVWKSPVDSPPFSYRDPQHGRDLYASPKFNSTATSFFCFGGNNSASNKSTYWSTRMENSTETFSPIALKESGEKRQGTGNGCRLFGIQLLENSNAEESLPTVTLSGRLGDDQSIPSLDAESDQHSEPSNVNRSDIPSVSCDAEKSCLRSPQESQSRQIRSCTKVHMQGMAVGRAVDLTQFDGYEDLLRKLEEMFDIKGELCGSAKKWQVVYTDNEDDMMMVGDDPWLEFCSVVRKIFIYTAEEVKKLSPKIGLPMNDEGKPSKLDSEAVVNPEDQSSVVGPSC* 668
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g3436 667 Gene3D - 538 632 - -
Lja6g3436 667 ProSiteProfiles PB1 domain profile. 543 636 IPR000270 GO:0005515
Lja6g3436 667 MobiDBLite consensus disorder prediction 488 520 - -
Lja6g3436 667 PANTHER AUXIN RESPONSE FACTOR 9 7 647 - -
Lja6g3436 667 SUPERFAMILY DNA-binding pseudobarrel domain 112 251 IPR015300 -
Lja6g3436 667 MobiDBLite consensus disorder prediction 653 667 - -
Lja6g3436 667 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 14 629 IPR044835 GO:0003677|GO:0006355|GO:0009725
Lja6g3436 667 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 7 647 IPR044835 GO:0003677|GO:0006355|GO:0009725
Lja6g3436 667 Pfam AUX/IAA family 540 633 IPR033389 -
Lja6g3436 667 Gene3D - 119 224 IPR015300 -
Lja6g3436 667 MobiDBLite consensus disorder prediction 635 667 - -
Lja6g3436 667 ProSiteProfiles B3 DNA-binding domain profile. 122 224 IPR003340 GO:0003677
Lja6g3436 667 Pfam Auxin response factor 248 330 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Lja6g3436 667 SMART B3_2 122 224 IPR003340 GO:0003677
Lja6g3436 667 MobiDBLite consensus disorder prediction 351 403 - -
Lja6g3436 667 SUPERFAMILY CAD & PB1 domains 545 620 - -
Lja6g3436 667 Gene3D - 285 357 - -
Lja6g3436 667 PANTHER AUXIN RESPONSE FACTOR 1 14 629 - -
Lja6g3436 667 Pfam B3 DNA binding domain 122 222 IPR003340 GO:0003677
Lja6g3436 667 MobiDBLite consensus disorder prediction 376 390 - -
Lja6g3436 667 CDD B3_DNA 120 222 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g3436 Lja-Chr6 62496715 62506420 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g3436 2 666 B3 DNA Binding Superfamily AT1G59750 71.791 0.0 956
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Lja6g3436 AUX_IAA 1.3e-11 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g3436 K14486 - gmx:100793224 1223.76
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja6g3436 6 62496715 62506420 Lja6g3436 6 62496715 62506420 ECH