Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g3432 ATGTCTGAAGAGGTTGGATCTATGTTGGTAGTTTATGATGATCCCTCTGACCAACACTCACTATCTTTGGGTGATACAAGCAGCACCGAGGAGTCACCTGATGAAACCAGGCTCTCCTTGGAAACAGCTAATGCTGCTATTCCATATATTGGTCAAAGGTTTGCTACTCATGATGCTGCTTACGAATACTATAGTGAATTTTCCAAGAGGTGCGGCTTCTCAATTAGACGTCACCGTACTGAGGGAAAAGATGGTGTTGGTAAAGGACTTACCAGACGCTACTTTGTTTGTCACCGCGCTGGTAATACTCCAGTCAAAACATCAACTCAAAGTAAACCTCAAAGAAATAGAAAGTCTTCTCGATGTGGCTGTCAAGCTTACATGCGGATAAGCAAAACAACAGAATTTGGAGCTCCAGAATGGCGCGTCACTGGATTTGCTAACCATCATAATCATGAACTTCTGGAACCTAACCAAGTTCGGTTCCTTCCTGCATACAGAACTATCTCAGACACCGACAAGAACCGAATCCTTATGTTTGCCAAAACAGGGATTTCTGTTCATCAAATGATGAGGCTTATGGAGCTTGAGAAGTGTGTGGAACCTGGGTTTTTACCTTTTACTGAAAAGGATATAAGGAATTTACTCCAGTCGTTTAGGAAATTAGATCCAGAAGAAGAAAGCTTAGATTTATTGAGAATGTGCAGAAACATTAAGGAGAAAGATCCTAATTTTAAATTTGAGTACACACTTGATGCAAACAACCGTTTGGAAAACATTGCTTGGTCCTATGCCTCATCAATCCAATTGTATGATATATTTGGTGATGCCGTGGTGCTTGATACAACACATCGCCTCACTGCATTTGACATGCCGCTAGGGATATGGGTTGGAATAAATAATTATGGAATGCCTTGCTTTTTTGGCTGTGTGCTTCTGCGGGATGAAACTGTCAGGTCATTTTCCTGGGCAGTGAAGGCTTTCTTAGGGTTTATGAATGGAAAGGCTCCACAGACTATATTGACTGACCAAAATATATGTCTCAAAGAAGCACTAGCTGAAGATATGCCAACAACAAAACATGCTTTCTGTATATGGATGATAGTAGCAAAGTTCCCATCTTGGTTCAATGCTGTTCTAGGGGAACGTTACAATGAGTGGAACGCTGAATTTTATAGACTTTATAATCTTGAGTCAGTGGAGGATTTTGAACTAGGCTGGAGGGAAATGGTTTGTTCTTTTGGGCTGCATTCAAATCGGCACATGGTTAATTTATATAGCTCTCGTTCACTTTGGGCATTGCCATTTTTGAGAAGCCATTTTCTTGCGGGAATGACTACAACAGGTCAGTCAAAGTCAATCAATGCTTTCATTCAACGATTTCTGAGTGCACAAACACGGCTGGCTCATTTTGTTGAACAGGTAGCTGTTGCTGTGGATTTTAAAGATCAAACTGGAGAACAGCAAACCATGCAGCAGAATCTTCAAAATGTTTGCCTCAAAACAGGAGCCCCAATGGAATCACATGCTGTCACAGTCCTCACTCCTTTTGCCTTTTCAAAGCTTCAAGAACAACTTGTGTTGGCAGCACATTATGCATCATTTTCAATTGAAGATGGTTTTCTTGTGAGACACCACATAAAAACTGAAGGAGGTCGGAAAGTTTATTGGTCCCCTCAGGAAGGAATCATAAGTTGCAGCTGCCACCAGTTTGAATTCTCTGGAATTCTATGTAGGCATTCTCTTAGAGTTCTTTCAACAGGAAATTGCTTTCAGATCCCAGATAGATATCTTCCCATTCGTTGGCGTCGTATGAGCGTGCCCTCTTCTAAGCTTCTTCAAAATGCATCAAGTGATCATGCTGAAAGAGTTAAGTTATTACAAAATATGGTTTCATCTCTGATTAATGAATCTGCTAAGTCTAAGGAACGATTAGATATTGCAACAGAACAAGTTTCCATCCTTCTTTCTCGCATAAGAGAGCAACCAATTTCATTACAAGGGGTCAGAGATATGTCTTCCATTAATAGAAATCTGACTCCAGGATACAAAATATAG 2058 0.4062 MSEEVGSMLVVYDDPSDQHSLSLGDTSSTEESPDETRLSLETANAAIPYIGQRFATHDAAYEYYSEFSKRCGFSIRRHRTEGKDGVGKGLTRRYFVCHRAGNTPVKTSTQSKPQRNRKSSRCGCQAYMRISKTTEFGAPEWRVTGFANHHNHELLEPNQVRFLPAYRTISDTDKNRILMFAKTGISVHQMMRLMELEKCVEPGFLPFTEKDIRNLLQSFRKLDPEEESLDLLRMCRNIKEKDPNFKFEYTLDANNRLENIAWSYASSIQLYDIFGDAVVLDTTHRLTAFDMPLGIWVGINNYGMPCFFGCVLLRDETVRSFSWAVKAFLGFMNGKAPQTILTDQNICLKEALAEDMPTTKHAFCIWMIVAKFPSWFNAVLGERYNEWNAEFYRLYNLESVEDFELGWREMVCSFGLHSNRHMVNLYSSRSLWALPFLRSHFLAGMTTTGQSKSINAFIQRFLSAQTRLAHFVEQVAVAVDFKDQTGEQQTMQQNLQNVCLKTGAPMESHAVTVLTPFAFSKLQEQLVLAAHYASFSIEDGFLVRHHIKTEGGRKVYWSPQEGIISCSCHQFEFSGILCRHSLRVLSTGNCFQIPDRYLPIRWRRMSVPSSKLLQNASSDHAERVKLLQNMVSSLINESAKSKERLDIATEQVSILLSRIREQPISLQGVRDMSSINRNLTPGYKI* 686
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g3432 685 SMART 26again6 564 591 IPR006564 GO:0008270
Lja6g3432 685 ProSiteProfiles Zinc finger SWIM-type profile. 553 589 IPR007527 GO:0008270
Lja6g3432 685 Pfam FAR1 DNA-binding domain 62 155 IPR004330 -
Lja6g3432 685 MobiDBLite consensus disorder prediction 1 36 - -
Lja6g3432 685 Pfam SWIM zinc finger 560 587 IPR007527 GO:0008270
Lja6g3432 685 Pfam MULE transposase domain 278 370 IPR018289 -
Lja6g3432 685 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 19 673 IPR031052 GO:0006355
Lja6g3432 685 PANTHER FAR1 DNA BINDING DOMAIN, ZINC FINGER, SWIM-TYPE, MULE TRANSPOSASE DOMAIN, FHY3/FAR1 FAMILY-RELATED 19 673 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g3432 Lja-Chr6 62465958 62469730 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Lja6g3432 MULE 7.6e-18 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g3432 - - gmx:100810717 1308.89
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja6g3432 6 62465958 62469730 Lja6g3432 6 62465958 62469730 ECH