Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g3431 ATGAGTGCAATGTGCCAATCTGTACGTGATTGTGAATGGGTGAAGGGTAAAATGGTTGGATCAGGATCTTTTGGCAGTGTACATTTGGCCATGAACAAATCCACCGGTGGACTTTTTGTTGTGAAATCAGCACGCTCAGGGACAGGACGTGAGGCTCTGAATAATGAGGCCAAAATCCTAAAAGCTTTGAAACCATCACCTTACATTGTCCAATGTTTGGGAACAAAGGAAGACAGAGGAGGAAACCTCAATGTTTTCATGGAGTACATGGCAGGGGGTAGTTTAGCCGATGTGTCTCACAAATTTGGCGGGTCATTACATGAAGAGGTGGTTCGGGTGTATACTAGAGAAATTCTTCAAGGGTTAAAACACCTTCACCAACATGGAATCGTGCATTGTGATCTCAAGTGCAAGAATGTGCTTTTGGGTTCATCTGGTAATATCAAGCTAGCAGATTTTGGATGCGCTAAAAGGGTCAAGGACTTGAATAATGACCGTGGAGGTTTGGCAAATTCTTTGCTGTGTGTTGGTGGCACTCCGCTATGGATGGCTCCTGAGGTATTGAGGAATGAGATGCTGGGTTTTGGTGCAGATATATGGTCTTTGGGGTGTACAGTTATTGAAATGGCTACTGGGAGACCTCCTTGGGGTGTTGTTGAGGGATCTAACCCAATGGCTTCTGTGTTGAGGATTGCTCATGGTGATGTGGTGCCTCACTTTCCATCACATATCTCTAAGGAGGGTTTGGATTTCTTGAGCATGTGTTTGGAGAGAAATGCTGATAAGAGGTGTAGCGCTGAGGAGTTACTAAGCCATCCATTTGTTTCAAGGAATAAACAATATGCTTCCTCACCAACATGTGTGTTGGAGATTCATAATTTTGAGGATACTTATGAATCAGAAGGACATGAAGGCACTAGTTTAGGGTCATCAGGGAATTGGATTACTGTTAGATCGGGATGA 963 0.4393 MSAMCQSVRDCEWVKGKMVGSGSFGSVHLAMNKSTGGLFVVKSARSGTGREALNNEAKILKALKPSPYIVQCLGTKEDRGGNLNVFMEYMAGGSLADVSHKFGGSLHEEVVRVYTREILQGLKHLHQHGIVHCDLKCKNVLLGSSGNIKLADFGCAKRVKDLNNDRGGLANSLLCVGGTPLWMAPEVLRNEMLGFGADIWSLGCTVIEMATGRPPWGVVEGSNPMASVLRIAHGDVVPHFPSHISKEGLDFLSMCLERNADKRCSAEELLSHPFVSRNKQYASSPTCVLEIHNFEDTYESEGHEGTSLGSSGNWITVRSG* 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g3431 320 ProSiteProfiles Protein kinase domain profile. 13 275 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja6g3431 320 SMART serkin_6 13 275 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja6g3431 320 MobiDBLite consensus disorder prediction 301 320 - -
Lja6g3431 320 CDD STKc_MAPKKK 12 275 - -
Lja6g3431 320 Gene3D Transferase(Phosphotransferase) domain 1 10 308 - -
Lja6g3431 320 Pfam Protein kinase domain 15 275 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja6g3431 320 ProSitePatterns Protein kinases ATP-binding region signature. 19 42 IPR017441 GO:0005524
Lja6g3431 320 ProSitePatterns Serine/Threonine protein kinases active-site signature. 130 142 IPR008271 GO:0004672|GO:0006468
Lja6g3431 320 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASE NPK1-LIKE 4 299 - -
Lja6g3431 320 SUPERFAMILY Protein kinase-like (PK-like) 13 287 IPR011009 -
Lja6g3431 320 PANTHER CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED 4 299 - -
Lja6g3431 320 MobiDBLite consensus disorder prediction 303 320 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g3431 Lja-Chr6 62463889 62464851 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g3431 13 293 MAP Kinase Kinase Kinase AT1G07150 41.438 3.14e-71 227
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Lja6g3431 Pkinase 4.6e-61 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g3431 K20716 - gmx:100798237 424.861
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja6g3431 6 62463889 62464851 Lja6g3431 6 62463889 62464851 ECH