Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g3428 ATGCCGCGGCGAGGAGGAGGAGGAGGAGGAGGATTCAGATTTTGCAAATTCAATTTGCATCTGCCTTGTCTTATGGGTTGCATATGCTCCAAGGGAAAATCTACAAATGATTATGTTGCTGCTGATAACCACCATCACCATCTCCATCTCACACAAACACAAATACAAACAGATTCCAAACCAAAGCATTCAGACAATGACACTGCTACTGCACGCCTCATTACCCATGCCGCCTCCACTCCCATTTCCTCCGACGAAGACAAGAATGCAAAATCACTCCAACCTAAGGTCTCTAGGATATTCAGTGTCACTAGAGGGGAAAGAGGGGCGCAGGTTCTTGCTGGCTGGCCTTCTTGGCTCACTGCTGTTGCAGGCGAAGCCATTTCTGGTTGGATACCTCGCAGAGCTGACTCATTTGAGAAGTTGGATAAGATCGGACAAGGAACTTACAGCAGTGTTTATAGAGCTCGTGATCTTGAAACAAACAAAATTGTTGCATTGAAGAAGGTTCGATTTGCTAATATGGATCCAGAAAGTGTTCGCTTTATGGCAAGAGAAATTCTTGTACTGCGAAGGCTTGATCATCCAAATGTCATGAAGCTTGAAGGCATGATTACTTCAAGGGTTTCTGGTAGCTTGTACCTTATTTTTGAATATATGGAGCATGATCTTGCAGGGCTTGCAGCAAGACCCAGCATCAATTTCACTGAAGCGCAGATCAAGTGTTATATGCAACAGCTTCTTCGAGGTCTTGAGCATTGTCACAGTCATGGTGTTATGCACCGTGACATCAAGGGCTCAAATCTTCTGCTTGACAATAATGGCAATCTAAAGATTGGTGACTTTGGACTTGCAACTCTGGTCCAGCCATCTCAAGGGCAGCCATTAACAAGTCGTGTAGTAACCTTGTGGTACAGACCACCTGAACTTTTACTTGGAGCTACAGATTATGGAGTTGCTGTGGACTTGTGGAGTGCTGGTTGTATTCTTGCAGAACTGTTTGCCGGGAAGCCTATAATGCCTGGACGAACAGAGGTGGAGCAACTTCATAAAATTTTCAAACTTTGTGGATCTCCTTCTGAAGAATACTGGAAGAAATCAAAGCTACCACATGCAACAATTTTCAAACCTCAACAACCTTATAAACGTCTTGTTTCTGAGACATTCAAAGATTTCCCCTCATCAGCACTGAGCCTCTTGGAGGTCCTACTTGGTATAGAACCAAAGGATAGAGGAACTGCATCTTTAGCACTTCAGAATGAGTTCTTCACAGCAAAGCCACTTCCTTGTGATCCATCAACTTTGCCAAAGTACCCACCAAGTAAGGAGTTTGATGCCAAACTTCGGGAAGAAGAAGCTAGAAGCAGACGGAGAGCTTCAAATAAAGGACATGGACAGGAATCAGTTGGGAGGAATTTTAGAGAGTCTAATGTTGTGCCAGCATCTGATGCTAATGCTGAGCTTCAGGCTTCAATGGAGAAGAGACAAGAGCAGTCCAAGTGCATTAGTGAGAAATTCAATCCTGAAGAGGATGGTGATTATGGCTTCCCTCTTGAACCTGCAAAGCCAAGAGCACTCAGTGTCTTCTCTCATTCTGGCCAGTCAATGCACCCAACTGCATATGGATCCTCACGCAATATGAATTTAAAACAGGAAGATGTTCTTACTGGCACTGACCATGCTGTTAAATCAAGAAACTGTGAGTTGAGAAAACAAAAATCCTACTGGCATGGTAGCACAAAGTTGTCAAGATTTTCTAGTTCAGTTGCAGTTCGAGGTGATTTGCGGCTTGATATGAGCGGAGACTGTAGTGTAAATTCACAGTGGCCAGAGGATCACTTTGGTATGAGATGTAGTCATTTGCCTGATGATGAGTCCAACCAATTGTTGGATGGACCCAAGCCTTCACGCAAGAAGGATTTCCATCTAAATGGGAATGATCGTGCTATGAGCAATGCTCCCAAAATGAGCCGCACACACTATTCCGGACCATTGCTGCCTCCGGAGGATAATCTTGAAGAAATGCTCAAGGAGCATGAAAGACAAATCCAACAGGCTGTCCGCAAAGCTCGTTTGGATAAGGACAAGATTAAAAAGGTTGACAGTGAGAATAGTCTAACCCGATCTCTTTTTTACAAGTGA 2142 0.4407 MPRRGGGGGGGFRFCKFNLHLPCLMGCICSKGKSTNDYVAADNHHHHLHLTQTQIQTDSKPKHSDNDTATARLITHAASTPISSDEDKNAKSLQPKVSRIFSVTRGERGAQVLAGWPSWLTAVAGEAISGWIPRRADSFEKLDKIGQGTYSSVYRARDLETNKIVALKKVRFANMDPESVRFMAREILVLRRLDHPNVMKLEGMITSRVSGSLYLIFEYMEHDLAGLAARPSINFTEAQIKCYMQQLLRGLEHCHSHGVMHRDIKGSNLLLDNNGNLKIGDFGLATLVQPSQGQPLTSRVVTLWYRPPELLLGATDYGVAVDLWSAGCILAELFAGKPIMPGRTEVEQLHKIFKLCGSPSEEYWKKSKLPHATIFKPQQPYKRLVSETFKDFPSSALSLLEVLLGIEPKDRGTASLALQNEFFTAKPLPCDPSTLPKYPPSKEFDAKLREEEARSRRRASNKGHGQESVGRNFRESNVVPASDANAELQASMEKRQEQSKCISEKFNPEEDGDYGFPLEPAKPRALSVFSHSGQSMHPTAYGSSRNMNLKQEDVLTGTDHAVKSRNCELRKQKSYWHGSTKLSRFSSSVAVRGDLRLDMSGDCSVNSQWPEDHFGMRCSHLPDDESNQLLDGPKPSRKKDFHLNGNDRAMSNAPKMSRTHYSGPLLPPEDNLEEMLKEHERQIQQAVRKARLDKDKIKKVDSENSLTRSLFYK* 714
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g3428 713 ProSitePatterns Protein kinases ATP-binding region signature. 145 168 IPR017441 GO:0005524
Lja6g3428 713 Pfam Protein kinase domain 139 423 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja6g3428 713 MobiDBLite consensus disorder prediction 630 645 - -
Lja6g3428 713 CDD STKc_CDK9_like 139 423 - -
Lja6g3428 713 PANTHER CELL DIVISION PROTEIN KINASE 89 694 - -
Lja6g3428 713 SUPERFAMILY Protein kinase-like (PK-like) 133 430 IPR011009 -
Lja6g3428 713 Gene3D Phosphorylase Kinase; domain 1 126 221 - -
Lja6g3428 713 PANTHER KINASE CDK9, PUTATIVE-RELATED 89 694 - -
Lja6g3428 713 SMART serkin_6 139 423 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja6g3428 713 MobiDBLite consensus disorder prediction 624 663 - -
Lja6g3428 713 MobiDBLite consensus disorder prediction 442 464 - -
Lja6g3428 713 ProSiteProfiles Protein kinase domain profile. 139 423 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja6g3428 713 Coils Coil 669 696 - -
Lja6g3428 713 ProSitePatterns Serine/Threonine protein kinases active-site signature. 259 271 IPR008271 GO:0004672|GO:0006468
Lja6g3428 713 Gene3D Transferase(Phosphotransferase) domain 1 222 463 - -
Lja6g3428 713 MobiDBLite consensus disorder prediction 429 480 - -
Lja6g3428 713 MobiDBLite consensus disorder prediction 465 480 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g3428 Lja-Chr6 62427576 62432814 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g3428 131 462 Core Cell Cycle Gene Families AT5G10270 50.720 2.63e-115 355
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Lja6g3428 Pkinase 9e-70 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g3428 - - gmx:100805055 1038.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja6g3428 6 62427576 62432814 Lja6g3428 6 62427576 62432814 ECH