Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g3423 ATGGACGACCCTAACGCTTCCCCGCACACCGTGACTGGTCGGAACCCTCGCCGGGAAGCTTCAGACGAAGTCGCGCCTCTTCCTCACGAAGCACAAACACCGTCAACATCGCAAGAGAAGGAAAGCCTAAACGTATTTCTCAGGATCCGACCCATTCCCATTCTATCACAAGCTCTGCGAGCTAGACCTAAAGTGGCGCCGGCGTGGCCTAAGAAACCAATGAGGAAGAACATACCACGACCGAAGAAAAAGAGCACCGCCGTGTGCTTATCGGTTCAGGATTCCCAGTCGGTGACGCTATCAACTCCCTCGAGCCTGCAGGTATCGAAGCGAATAGAATCAGTGACTTATGGGGGTTTCTCTCACGTTTTTTCTTCCGATTCATCCCAGTCTCTAGTGTATGATAGAATGGTGAGACCCATGGTGGATGAATTCCTTAAGGGTAGAAGTGGAATGCTGGCTGCTTTGGGGCCTAGCGGGTCAGGGAAGACACATACTGTGTTTGGAACCCCAAGGGATCCTGGAATGGTTCCTCTTGCCCTCCGCCATATTTTCAACGAGACTGAGCCTTCAAGGTCATACTACTTATCAATATTTGAGATATATACTGAACGAGGTAAAACAGAGAAGCTACTTGATTTATTTCCGAATGGCAATGAACTAAGCATGCACCAATCCACTGTAAACGGCCTGCAAGAGGTTCTCATCTCTAATGCTGAACAGGCAGATTCCTTAATAACAAAAGCAATGTTGAAACGAGCAACTGCAATGACAAACACCAACAGTCAGTCCAGCCGCTCACAGTGCATCATTAGCATTCATGATGTTCCCCAAAAATGTAAAGGAGTTGTCAATTCTAAGTCAAATGGTGCTGTTTTGACTATCATAGATCTTGCTGGATCTGAACGAGAAAAAAGAACAGGGAATCAGGGGACAAGATTGCTTGAAAGCAATTTTATCAACAACACATTAATGGTGTTTGGCTTATGTTTAAGATCCTTGTTGGAGCACCAGAAAAATCCAAAAAAGCCGTTGCAGAAGCACTTCCAAAGCTCTATGTTGACTAGGTATTTACGAGATTATTTGGAGGTCAGGAAGCGGATGGCATTGATTTTAACAGCAAAGTCAGGAGAGGACGATTATCTTGATACATCTTACCTACTGAGACAAAGTTCTCCATATATGGAAATCAGGTATAATGTAGTTGAAGCACCAAATATGGTTCCCAGTAAAAGGCATTACCAAGCTTCCATAATGGATAACGTGGATCCATCACCTTCTTCAGAACAAAAGAGAGTTAGAGTTGTTAGTCAACATACTGTGCAGAATGAAAAAAAAGATGTTGAAGAATGCAACACTTATAAGGAAGATGCTTCAACCGTATGCAAGTTAGATGCATGTGATGACAGTGAGAGAAGCCATACTATTTTTAAAAATTTTGCAAAAGTCATTTGGAGTTGTTTGAAGCAAAACAACTCCAAATTAAAGGCTGTAGAAAGAGAGTATGAAAAGGTCAAAGAAAGCCTCCAGGCTGTAGAAAAAGAGTATGAAAAGGTCAAAGAAAGCCTCGAGGATGAAAAGAAAAAGAACATAGAGCTGGAAAACCGGTTGATCGAATTGAAGAAAACAATGCATACAAAGTCATCATCTGATAATATACTTGACCAGTTAGATGAACTTACTCTTGTCACTTCCTGTATAGAAGAAGTAGATCCAGATTCTGAAAAATGGGAAGTCTCAATCTCTTCATCTTCAAAACCAGAGCATAATGAAGCTTCGAAGAAAACAATGCATGCAAAGTCATCATCTGATAATATACTTGACCAGTTAGATGAACTTACGCTTGGCACTTCCTGTATAGAAGAAGTAGATCCAGATTCTGAAAAATGGGAAGTCTCAATCTCTTCATCTTCAAAACCAGAGCATAATGAAGCTTCGAAGGTGGATACTGCGACTAGTGATCCTGTTCTTCAGCTAAGAAGACCAACCAAAAAATGGTCTGAAGTGGAGGTAGCCACGTTTCTAAGTGCGGTGGAGAAGTTTGGACCAGGACAATGGAAACTGATTGAAAACTTTCATAAAAGTACATTTAAAGACAGAACAAACAAAGATTTGAAGGATAAGTGGCGAAATCTAACCAAATGTAGGAAGAAAAAAGCGTGA 2163 0.4175 MDDPNASPHTVTGRNPRREASDEVAPLPHEAQTPSTSQEKESLNVFLRIRPIPILSQALRARPKVAPAWPKKPMRKNIPRPKKKSTAVCLSVQDSQSVTLSTPSSLQVSKRIESVTYGGFSHVFSSDSSQSLVYDRMVRPMVDEFLKGRSGMLAALGPSGSGKTHTVFGTPRDPGMVPLALRHIFNETEPSRSYYLSIFEIYTERGKTEKLLDLFPNGNELSMHQSTVNGLQEVLISNAEQADSLITKAMLKRATAMTNTNSQSSRSQCIISIHDVPQKCKGVVNSKSNGAVLTIIDLAGSEREKRTGNQGTRLLESNFINNTLMVFGLCLRSLLEHQKNPKKPLQKHFQSSMLTRYLRDYLEVRKRMALILTAKSGEDDYLDTSYLLRQSSPYMEIRYNVVEAPNMVPSKRHYQASIMDNVDPSPSSEQKRVRVVSQHTVQNEKKDVEECNTYKEDASTVCKLDACDDSERSHTIFKNFAKVIWSCLKQNNSKLKAVEREYEKVKESLQAVEKEYEKVKESLEDEKKKNIELENRLIELKKTMHTKSSSDNILDQLDELTLVTSCIEEVDPDSEKWEVSISSSSKPEHNEASKKTMHAKSSSDNILDQLDELTLGTSCIEEVDPDSEKWEVSISSSSKPEHNEASKVDTATSDPVLQLRRPTKKWSEVEVATFLSAVEKFGPGQWKLIENFHKSTFKDRTNKDLKDKWRNLTKCRKKKA* 721
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g3423 720 Gene3D - 657 716 - -
Lja6g3423 720 Pfam Myb-like DNA-binding domain 663 712 IPR001005 -
Lja6g3423 720 Pfam Kinesin motor domain 104 389 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Lja6g3423 720 MobiDBLite consensus disorder prediction 65 84 - -
Lja6g3423 720 MobiDBLite consensus disorder prediction 575 603 - -
Lja6g3423 720 PRINTS Kinesin heavy chain signature 292 310 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Lja6g3423 720 PRINTS Kinesin heavy chain signature 148 169 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Lja6g3423 720 PRINTS Kinesin heavy chain signature 258 275 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Lja6g3423 720 PRINTS Kinesin heavy chain signature 347 368 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Lja6g3423 720 SUPERFAMILY Homeodomain-like 660 714 IPR009057 -
Lja6g3423 720 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 35 397 IPR027417 -
Lja6g3423 720 CDD SANT_TRF 664 714 - -
Lja6g3423 720 PANTHER KINESIN-RELATED 40 636 IPR027640 GO:0003777|GO:0007018
Lja6g3423 720 ProSiteProfiles Myb-like domain profile. 665 713 IPR001005 -
Lja6g3423 720 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 665 717 IPR017930 -
Lja6g3423 720 SMART kinesin_4 40 403 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Lja6g3423 720 SMART sant 662 715 IPR001005 -
Lja6g3423 720 MobiDBLite consensus disorder prediction 1 41 - -
Lja6g3423 720 Gene3D Kinesin motor domain 33 406 IPR036961 -
Lja6g3423 720 PANTHER KINESIN-LIKE PROTEIN KIF23 40 636 - -
Lja6g3423 720 Coils Coil 488 543 - -
Lja6g3423 720 ProSiteProfiles Kinesin motor domain profile. 42 397 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Lja6g3423 720 MobiDBLite consensus disorder prediction 624 651 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g3423 Lja-Chr6 62382062 62388433 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g3423 115 373 Miscellaneous Gene Families AT4G39050 32.103 3.68e-25 110
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Lja6g3423 Kinesin 2.1e-51 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g3423 K10401 - gmx:100794655 699.123