Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g3422 ATGGATGGTGATGCCGGAAGTTGGGCGGTGGAATTCATAAGGGGGCGAATTCCAAACAGCACTATACTGAGAGTATTGGTTCGCACCCTCGCTGTTGCTCCGAAGATGGACTCATCGTACTTCAAGACTATGATCCTTGGGATGCTTCAAGAGTGTTGTTGGAGTGTCTCAATTGAGGAATACATGCTTGAAATTATGGAAATCCTCGAACGAAGTCTTGATCACGAGGGTTCTCCCATCAGCGCTGCCTTTCGTGCCGCATATTGTACGGTGGCCGTGGAATGTACTCTTAAGTACCTTGAGGTAGATCTCTCTAGTCCTAAATACATTGACGCTGTTCAGAGAATATGGTCAGGAAGGGTTAGGCAGATGAGACCCTCTTCTGGTGGTGAAAGCCAATGCCCTTTGTTCTCTGAGGAGTTGGAAAGGTGGATGACAGAGATTGAGGCATCCCTGATAGACACATGTATCAGAGATCGGTTGGCAGCCTTAAAGAACACTAGAGTCGTGGCCATTCAAAAGCTCAAGATCTTTTTGGCAGAGTCCTGGGATAACTTTGACCCTTCCTTTCTTGAGCAGCTGGCAGGGGAGAATGATGTTTTTCTCTCCAATGTTGCTAAAGGGTGGTGCTTGCCTCCACAGGGTCAGAAAGAGCAACAGAAAGAAACTGCTAATGTTGGTGACCGTTCTCCAACAACTGCTGATGAGTGGAAGAAGTTTGTGAATCGCTCCTGCAGTGGGACATCATATGGTACTCTGCTGCCTAGCCCTAAGATGAAGAAGGTTTCTCCTTTAAAGGAGTATGATGATTCCACAAATGTTATAAAAAAGAGAAGAATAACAAAAAGATGGTGTCAACTAGAAAAAGAGACTCTACTAGCTGGGGTAAACAAATTTGGTGAAGGTAACTGGACATTCATTTTAAGTACTCACAAGGATGTGTTTAAAGGGAGAACTTCCGTCGATTTAAAGGATAAATGGCGAAACATGAATCTGCATACAGGCATTTGA 1011 0.4471 MDGDAGSWAVEFIRGRIPNSTILRVLVRTLAVAPKMDSSYFKTMILGMLQECCWSVSIEEYMLEIMEILERSLDHEGSPISAAFRAAYCTVAVECTLKYLEVDLSSPKYIDAVQRIWSGRVRQMRPSSGGESQCPLFSEELERWMTEIEASLIDTCIRDRLAALKNTRVVAIQKLKIFLAESWDNFDPSFLEQLAGENDVFLSNVAKGWCLPPQGQKEQQKETANVGDRSPTTADEWKKFVNRSCSGTSYGTLLPSPKMKKVSPLKEYDDSTNVIKKRRITKRWCQLEKETLLAGVNKFGEGNWTFILSTHKDVFKGRTSVDLKDKWRNMNLHTGI* 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g3422 336 ProSiteProfiles Myb-like domain profile. 276 331 IPR001005 -
Lja6g3422 336 PANTHER MYB TRANSCRIPTION FACTOR 1 223 - -
Lja6g3422 336 PANTHER MYB TRANSCRIPTION FACTOR 246 331 - -
Lja6g3422 336 PANTHER MYB TRANSCRIPTION FACTOR 246 331 - -
Lja6g3422 336 CDD SANT_TRF 282 331 - -
Lja6g3422 336 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 276 336 IPR017930 -
Lja6g3422 336 Gene3D - 272 332 - -
Lja6g3422 336 Pfam Myb-like DNA-binding domain 282 330 IPR001005 -
Lja6g3422 336 PANTHER MYB TRANSCRIPTION FACTOR 1 223 - -
Lja6g3422 336 SUPERFAMILY Homeodomain-like 278 331 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g3422 Lja-Chr6 62372249 62377713 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g3422 8 330 Single Myb Histone (SMH) Gene Family AT1G15720 27.692 4.10e-16 76.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Lja6g3422 Myb_DNA-binding 4.1e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g3422 - K11111 lja:Lj1g3v3343860.1 304.679