Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g3418 ATGGCGTCTGCTAGCCTTGGAAATGGTGGGGTTGGCAGTTCCAGGTCTGTGGTGAGAGGAGGTTCTTCTTCTTCTTCGACTTCGACTTCTACTTCTGTGGATTGGCTTGGTAGAGAGATGCTTGAGATGAGGTTGAGAGACAAGGTGCTCGACCCTGATGATGGCACTGGCAGAGAGAGTGAGCCTGAGCCTGAGCCTGACATCATTGATGGTGTGGGTGCTCAAACAACAGGCCATGTCATAAGAACAAGCATTGCCGCCCCAAATGCTCAATCTAAACAGAATGTTACTTATATTTCGGAGCACGTTGTTGGAACAGGCTCTTTTGGTGTTGTTTTTCAAGCAAAATGTAGGGAAACTGGAGAAATCGTAGCTATCAAGAAGGTTCTACAGGACAAGCGCTACAAAAATAGAGAGTTGCAGATTATGCAAATGTTGGATCATCCAAATATTGTTTCCCTCAGGCATTGTTTCTTTTCAACCACCGACAAAGAAGAACTTTACTTAAATCTTGTACTTGAATATGTTCCTGAAACCGTCAATCGAATTGCAAGGAACTATAGCCGGATTAACCAGCGAATGCCTTTAATATATGTAAAGCTTTATACTTACCAGATATGCAGGGCCCTTGCTTATATTCATAATTGCATTGTCATCTGTCATCGTGACATCAAACCTCAGAACCTACTTGTGAACCCACACACTCATCAGCTGAAACTATGCGATTTTGGGAGTGCAAAAGTGTTGGTGAAAGGAGAACCTAATGTGTCTTACATCTGTTCAAGATACTACCGTGCTCCAGAACTTATATTTGGTGCCACCGAATATACAACTGCCATAGATATATGGTCTACTGGTTGTGTAATGGCTGAGTTGCTTCTCGGACAGCCCTTGTTTCCTGGAGAGAGTGGAGTTGATCAACTAGTCGAAATCATCAAGGTTTTGGGAACACCAACCAGGGAGGAGATAAAATGCATGAACCCAAACTATACTGAATTTAAGTTTCCACAGATCAAGCCTCATCCATGGCACAAGGTCTTTCAGAAACGTTTGCCCCCAGAAGCAGTGGATCTTGTCTGTAGGTTCTTTCAGTACTCTCCTAATTTGAGATGTACTGCTTTGGAAGCTTGCATTCATCCCTTCTTTGATGAGTTGAGGGACCCGAACACCCGCCTTCCTAATGGTCGCCCCCTTCCTCCGCTGTTTAATTTTAAACCTCAGGAACTTTCTGGTATCCCCTCTGACGTAATCAATCGGCTAATTCCAGAGCATGCTCGCAAGCAGAACTTATTTATGGCTTTGCACTCCTAG 1311 0.4401 MASASLGNGGVGSSRSVVRGGSSSSSTSTSTSVDWLGREMLEMRLRDKVLDPDDGTGRESEPEPEPDIIDGVGAQTTGHVIRTSIAAPNAQSKQNVTYISEHVVGTGSFGVVFQAKCRETGEIVAIKKVLQDKRYKNRELQIMQMLDHPNIVSLRHCFFSTTDKEELYLNLVLEYVPETVNRIARNYSRINQRMPLIYVKLYTYQICRALAYIHNCIVICHRDIKPQNLLVNPHTHQLKLCDFGSAKVLVKGEPNVSYICSRYYRAPELIFGATEYTTAIDIWSTGCVMAELLLGQPLFPGESGVDQLVEIIKVLGTPTREEIKCMNPNYTEFKFPQIKPHPWHKVFQKRLPPEAVDLVCRFFQYSPNLRCTALEACIHPFFDELRDPNTRLPNGRPLPPLFNFKPQELSGIPSDVINRLIPEHARKQNLFMALHS* 437
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g3418 436 MobiDBLite consensus disorder prediction 1 72 - -
Lja6g3418 436 MobiDBLite consensus disorder prediction 39 65 - -
Lja6g3418 436 ProSitePatterns Serine/Threonine protein kinases active-site signature. 219 231 IPR008271 GO:0004672|GO:0006468
Lja6g3418 436 ProSiteProfiles Protein kinase domain profile. 98 382 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja6g3418 436 Gene3D Transferase(Phosphotransferase) domain 1 178 426 - -
Lja6g3418 436 PANTHER SHAGGY-RELATED PROTEIN KINASE DELTA-RELATED 1 433 - -
Lja6g3418 436 PANTHER GLYCOGEN SYNTHASE KINASE-3 ALPHA 1 433 - -
Lja6g3418 436 MobiDBLite consensus disorder prediction 1 35 - -
Lja6g3418 436 CDD STKc_GSK3 93 385 IPR039192 -
Lja6g3418 436 SMART serkin_6 98 382 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja6g3418 436 SUPERFAMILY Protein kinase-like (PK-like) 98 409 IPR011009 -
Lja6g3418 436 Gene3D Phosphorylase Kinase; domain 1 83 177 - -
Lja6g3418 436 Pfam Protein kinase domain 100 382 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja6g3418 436 ProSitePatterns Protein kinases ATP-binding region signature. 104 128 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g3418 Lja-Chr6 62316883 62323986 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g3418 104 385 Core Cell Cycle Gene Families AT1G76540 35.172 4.53e-56 186
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_GSK Lja6g3418 Pkinase 3.9e-64 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g3418 K03083 - gmx:100799387 763.451
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja6g3418 6 62316883 62323986 Lja6g3418 6 62316883 62323986 ECH