Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g3416 ATGGGGGATGAGTCGCCGAAGAACAAAGTGAAGTTCTTGTGCAGCTACGGCGGAAAGGTTCTTCCACGACCCTCCGATGGGGTTCTCAAGTACGTGGGCGGCGAGACTCGTGTCATCTGTGTCCCTCGTGACATCACTTTCTCCGAAATGATGAAGAAGGTGAATGGCATGGTTGATGGTGAGGTAGTCCTCAAGTACCAGGTGATCCCTGAAGACCTTGATGCTCTGGTTTCGGTTAGAACAGAGGAAGACATCAAGCACATGATTGAGGAGCAGGATCGCCATGAGAGTTCCGGTGGACCGCTGCTTCGTGCTTTTCTCTTCCCTTCCAAGCCTGTTACGCAACAACTCCAAATCCAAGTGCCACCTCCACCATCATGCGAACCTTATTTCATAGAACAACGTTATATTGATGCCATCAACGGCATCATTCGTACGAGCCCAAGGAGTTGTAAGGTAACCCCCGCTGCTTGCTCAGCTTGTTCTTCCCCCAAATCAACCTCCCCAGATGCTCACACTGTTGAATCGCCTCCTCCTTCATTCCTGAGTTCTGTTGCTCGGGTTTCAAATTCAATGCATAAAGTGCGAAGCTCCCCCAGTTTAACCAACCTCAGTCAGCATGATCATAGTACTAGTCATTACAACCACCACCATCACCATCCTGTTGCTGTTGCTTATCCATCATCATGTAAAAACCTACAAGAGGCCCATCTTGGCATGGGAAGACCGCCACAAATGATGGCAGAAATGAACACTAAAGGTCCAACAGGTCTTAGTTACTACTACCCAGCAACCAGAACCCACAACAAAGGCGGCTATATGTACCAAGATGAGTCTGCACCACCTAATGGTCATTATATGTTTGAAAGAGTTCACAGTGTGCCCAGGAGTCGAAGTCCTCTAAAGTCCATATGGGACTAG 921 0.4864 MGDESPKNKVKFLCSYGGKVLPRPSDGVLKYVGGETRVICVPRDITFSEMMKKVNGMVDGEVVLKYQVIPEDLDALVSVRTEEDIKHMIEEQDRHESSGGPLLRAFLFPSKPVTQQLQIQVPPPPSCEPYFIEQRYIDAINGIIRTSPRSCKVTPAACSACSSPKSTSPDAHTVESPPPSFLSSVARVSNSMHKVRSSPSLTNLSQHDHSTSHYNHHHHHPVAVAYPSSCKNLQEAHLGMGRPPQMMAEMNTKGPTGLSYYYPATRTHNKGGYMYQDESAPPNGHYMFERVHSVPRSRSPLKSIWD* 307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g3416 306 MobiDBLite consensus disorder prediction 193 209 - -
Lja6g3416 306 Pfam PB1 domain 29 109 IPR000270 GO:0005515
Lja6g3416 306 PANTHER OS05G0427100 PROTEIN 4 271 - -
Lja6g3416 306 CDD PB1_UP2 13 108 - -
Lja6g3416 306 PANTHER OS05G0427100 PROTEIN-RELATED 4 271 - -
Lja6g3416 306 MobiDBLite consensus disorder prediction 193 217 - -
Lja6g3416 306 SUPERFAMILY CAD & PB1 domains 25 114 - -
Lja6g3416 306 SMART PB1_new 24 110 IPR000270 GO:0005515
Lja6g3416 306 Gene3D - 30 108 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g3416 Lja-Chr6 62311365 62312607 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g3416 3 176 MAP Kinase Kinase Kinase AT3G46920 38.418 2.89e-31 121
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g3416 - - mtr:MTR_2g005700 313.923
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja6g3416 6 62311365 62312607 Lja6g3416 6 62311365 62312607 ECH