Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g3412 ATGGTCCCCTTGACCTTGATTCTTTTCACTCTGTTTTCTCTTCTGGGTTCCTCTGTTTGTGCTTCATCCTTGCTAAGTGATTTCCATGTCCTAGTCTTGCTTAAAGAAGGATTCCAATTCCCACACCCAGTTCTAAACAGTTGGGACACTTCCAATTTCAGCTCAGTTTGTTCATGGGCTGGAATTCAATGCCACAAGGGACGAGTTGAGTCGGTGGACTTAACAGATATGGCTCTGTATGGCTCTGTTTCTCCTTCAATTTCCACACTTGATAGGCTCACACACCTTTCCCTTACAGGCAACAACTTCACTGGCACCATTGACATCACCAACTTGACCAGCCTTCAATTTCTCAATATCTCCAATAACATGTTCAGTGGCCACATGGACTGGAACTACACCACCCTGGAGAACTTACAAGTAATTGATGCCTACAACAATAACTTCACAGCCTTGCTCCCTCTGGGGCTTCTGAGTTTGAAGAGGCTGAGGTACTTGGATCTTGGTGGGAACTTCTTCTACGGTGAAATCCCAGAAAGCTATGGAAATTTAGCAGGCCTGGAGTATCTCTCAGTAGCAGGAAATGACATTCGTGGCAAAATCCCAGGTGAGTTGGGAAATCTCACTAACTTGAGGGAGATTTATTTGGGCTATTACAATTCTTTTGAAGGTGGGATTCCAGTGGAGTTTGGAAAGTTGGTAAATTTAGTTCACATGGATCTCTCAAGCTGTGATTTGGATGGTCCAATTCCAAGAGAGTTAGGCAACTTGAAGAAACTCAACACTCTTTACTTGCATATCAATCAGCTTTCTGGTTCAATACCAAAACAGCTCGGCAACTTGACTAACTTGGTGCACCTTGACCTTTCCAGCAATGCACTCACGGGAGAAATCCCATTTGAGTTCATCAACCTCAAACAACTCAAGCTTTTCAATCTTTTCTTGAACAGGTTACACGGCTCCATACCGGAATACCTTGCAGACTTGCAGGATTTAGAGACACTCGGGCTGTGGATGAACAACTTCACAGGAGAAATTCCACAGAACCTAGGCCTGAGTGGGAATCTGCAAGTGCTTGATTTGTCCTCCAATAAGCTCACTGGTGTGATTCCACCTCACCTGTGTTCCTCAAACCAGCTCAGGATTTTGATTCTTCTGAATAACTTCCTCTTTGGGCCCATACCTGAAGGTGTGGGAACATGTTACAGTCTCACTAGAGTAAGGTTAGGGCAGAATTACCTGAATGGTAGCATTCCAAATGGCCTTCTTTACCTTCCTAAGCTAAATTTAGCTGAGTTACAGAACAACTACTTGTCAGGAACTTTGTCAGAGAATGCTAATAGTTCCTCTCAGCCTGTTAATTTAGAACAACTTGATTTGTCAAACAATGCCTTGTCTGGTCCTTTACCATATTCAGTCTCAAATTTCTCTACCATTCAAATCCTTTTGCTTAGTGGAAACCAGTTCTCAGGTCCAATTCCACCTTCCATTGGAGGACTCAATCAAGTGCTAAAGCTTGATCTTAGCAGAAACTCATTATCTGGGGAAATTCCTCCTGAAGTTGGGTACTGTGTCCATCTTACCTACCTTGACATGAGCCAGAACAATCTTTCTGGCTCCATCCCTCCTATAATTTCCAATATTCGTATCTTGAATTACTTGAACTTGTCAAGAAACCATTTGAACCAAACCATCCCAAGATCAATAGGAACCATGAAAAGCCTCACTGTTGCTGATTTCTCCTTCAATGAGTTCTCCGGCAAATTGCCAGAGTCAGGGCAATTTGGCTTGTTCAATGCCTCATCTTTTGCAGGAAACCCTCAACTTTGTGGTTCTCTGTTAAACAACCCTTGTAATCTGACGAGAATTGCATCGAATTCTGGAAAAAGCCCTGCAGATTTCAAGCTAATATTTGCCCTTGGCCTATTGGTATGCTCCCTAATATTTGCAATTGCAGCAATTATAAAATCCAAGTCATTCAAAAGGAATGGCCCTGGTTCCTGGAAGATGACAACGTTCCAGAAAGTGGAATTCACAGTTTCAGACATCCTTGAATGCGTGAAAGATGGCAACGTGATTGGAAGAGGAGGTGCTGGGATTGTTTACCATGGAAAAATGCCAAACGGGGTCGAAGTTGCAGTGAAGAAATTGATGGGGTTCGGTGCAAACAGCCATGACCATGGGTTCCGAGCTGAAATCCAAACTCTAGGAAACATAAGGCACAGAAACATAGTGAGGCTACTCGCATTCTGCTCCAACAAGGACACAAATCTGCTGGTGTACGAGTACATGAGGAATGGAAGCTTAGGTGAGGCATTGCATGGGAAGAAAGGTGCATTCCTGAGCTGGAACATGAGGTACAAAATCTCCATTGATTCAGCGAAAGGGCTCTGCTACCTTCACCATGATTGTTCACCATTGATACTCCACCGAGACGTGAAGTCGAACAACATTCTGTTGAATTCAAATTTCGAAGCACACGTCGCTGATTTCGGCCTCGCAAAGTTCTTGGTGGATGCCGGCGCCTCCGAGTACATGTCTTCAATTGCAGGCTCCTACGGTTACATTGCACCTGAATATGCTTATACATTGAGGGTGGATGAAAAAAGTGATGTTTATAGTTTTGGAGTTGTTCTACTGGAGCTAATAACAGGGAGGAAACCGGTGGGAGATTTCGGCGAAGGTGTGGATCTTGTACAATGGTGTAAGAAAGCAACGAATTGCCGGAAAGAAGAGGTGATGAACATAGCTGATGTGAGGCTAACGGTGGTGCCAAAAGAGGAAGCAATGCACATGTTGTTCATTGCAATGTTATGCTTAGAAGAGAACAGTGTGGAGAGACCCACCATGAGGGAAGTGGTTCAGATGCTCTCTGAATTTCCTCAGCAAACACTTACACTAGAGTACCAATCATCTTCCTCTAATTATTCCACAATTACAAGCCCAGGCCCAGCAACCAAGAAACTTCAACCTTGTCTACCCACTTTTAAACAAGACCTTTTGGTTTAG 3009 0.4374 MVPLTLILFTLFSLLGSSVCASSLLSDFHVLVLLKEGFQFPHPVLNSWDTSNFSSVCSWAGIQCHKGRVESVDLTDMALYGSVSPSISTLDRLTHLSLTGNNFTGTIDITNLTSLQFLNISNNMFSGHMDWNYTTLENLQVIDAYNNNFTALLPLGLLSLKRLRYLDLGGNFFYGEIPESYGNLAGLEYLSVAGNDIRGKIPGELGNLTNLREIYLGYYNSFEGGIPVEFGKLVNLVHMDLSSCDLDGPIPRELGNLKKLNTLYLHINQLSGSIPKQLGNLTNLVHLDLSSNALTGEIPFEFINLKQLKLFNLFLNRLHGSIPEYLADLQDLETLGLWMNNFTGEIPQNLGLSGNLQVLDLSSNKLTGVIPPHLCSSNQLRILILLNNFLFGPIPEGVGTCYSLTRVRLGQNYLNGSIPNGLLYLPKLNLAELQNNYLSGTLSENANSSSQPVNLEQLDLSNNALSGPLPYSVSNFSTIQILLLSGNQFSGPIPPSIGGLNQVLKLDLSRNSLSGEIPPEVGYCVHLTYLDMSQNNLSGSIPPIISNIRILNYLNLSRNHLNQTIPRSIGTMKSLTVADFSFNEFSGKLPESGQFGLFNASSFAGNPQLCGSLLNNPCNLTRIASNSGKSPADFKLIFALGLLVCSLIFAIAAIIKSKSFKRNGPGSWKMTTFQKVEFTVSDILECVKDGNVIGRGGAGIVYHGKMPNGVEVAVKKLMGFGANSHDHGFRAEIQTLGNIRHRNIVRLLAFCSNKDTNLLVYEYMRNGSLGEALHGKKGAFLSWNMRYKISIDSAKGLCYLHHDCSPLILHRDVKSNNILLNSNFEAHVADFGLAKFLVDAGASEYMSSIAGSYGYIAPEYAYTLRVDEKSDVYSFGVVLLELITGRKPVGDFGEGVDLVQWCKKATNCRKEEVMNIADVRLTVVPKEEAMHMLFIAMLCLEENSVERPTMREVVQMLSEFPQQTLTLEYQSSSSNYSTITSPGPATKKLQPCLPTFKQDLLV* 1003
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g3412 1002 SUPERFAMILY RNI-like 71 413 - -
Lja6g3412 1002 Gene3D Ribonuclease Inhibitor 220 319 IPR032675 -
Lja6g3412 1002 Gene3D Ribonuclease Inhibitor 133 219 IPR032675 -
Lja6g3412 1002 Gene3D Phosphorylase Kinase; domain 1 653 763 - -
Lja6g3412 1002 Pfam Leucine Rich repeat 524 539 IPR001611 GO:0005515
Lja6g3412 1002 Pfam Leucine Rich repeat 281 297 IPR001611 GO:0005515
Lja6g3412 1002 Pfam Protein tyrosine and serine/threonine kinase 690 957 IPR001245 GO:0004672|GO:0006468
Lja6g3412 1002 Gene3D Ribonuclease Inhibitor 326 621 IPR032675 -
Lja6g3412 1002 SUPERFAMILY L domain-like 353 611 - -
Lja6g3412 1002 SUPERFAMILY Protein kinase-like (PK-like) 675 957 IPR011009 -
Lja6g3412 1002 Pfam Leucine rich repeat N-terminal domain 26 64 IPR013210 -
Lja6g3412 1002 Pfam Leucine Rich Repeat 355 375 IPR001611 GO:0005515
Lja6g3412 1002 ProSiteProfiles Protein kinase domain profile. 687 961 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja6g3412 1002 Gene3D Transferase(Phosphotransferase) domain 1 764 979 - -
Lja6g3412 1002 PANTHER UNNAMED PRODUCT 6 965 - -
Lja6g3412 1002 Gene3D Ribonuclease Inhibitor 27 132 IPR032675 -
Lja6g3412 1002 ProSitePatterns Serine/Threonine protein kinases active-site signature. 808 820 IPR008271 GO:0004672|GO:0006468
Lja6g3412 1002 SMART serkin_6 687 961 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja6g3412 1002 ProSiteProfiles Leucine-rich repeat profile. 355 376 IPR001611 GO:0005515
Lja6g3412 1002 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE BAM3 6 965 - -
Lja6g3412 1002 SMART LRR_typ_2 548 572 IPR003591 -
Lja6g3412 1002 SMART LRR_typ_2 184 208 IPR003591 -
Lja6g3412 1002 SMART LRR_typ_2 354 377 IPR003591 -
Lja6g3412 1002 SMART LRR_typ_2 257 280 IPR003591 -
Lja6g3412 1002 SMART LRR_typ_2 281 305 IPR003591 -
Lja6g3412 1002 SMART LRR_typ_2 500 524 IPR003591 -
Lja6g3412 1002 SMART LRR_typ_2 136 159 IPR003591 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g3412 Lja-Chr6 62181344 62186466 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g3412 18 962 Receptor kinase-like Gene Family AT5G65700 56.712 0.0 1059
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Lja6g3412 PK_Tyr_Ser-Thr 9.5e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g3412 - - tcc:18607145 1545.41
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja6g3412 6 62181344 62186466 Lja6g3412 6 62181344 62186466 ECH