Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g3396 ATGGAACTATCAGATTTGCAAAACAACAACAACAACAACAACAGAGGAACTAGTACTACTCATCATCCCCACCACCACCAACAAGAACCTTCTCCTTCTCCTCCTTCTTCTGTTTTCGATGGCAGACAATCTGCACCCTTCATCATGGGCTCCATGTCCATCCAAGCTGGCCTCACCACAACCTCTTCTTCATCTTCCTCTTCCAATTCTTCTTCATCATCATCTCCTTCTGCTTCTGTCTCCGCCCCCGCCCCCTCTCAACTCATTGACGCCTCCTTAGCCATCGCCACCAGATCTGACCCTCCCACCCACCAGTTAACCATCGCAGCCCCCACCCCCGCCCCCGTCACCACCGTCGCCAACCCGCCCAAGCGATCCACTAAAGACAGGCACACCAAGGTCGATGGCCGCGGCAGGAGAATTCGAATGCCGGCCACGTGCGCCGCCAGGGTTTTCCAGCTCACCAGAGAATTGGGGCACAAGTCCGACGGAGAGACCATCGAGTGGCTCCTCCAGCAGGCCGAGCCGGCCATCATCGCCGCCACCGGCACCGGGACAATCCCCGCCAACTTCTCCACCCTCAACGTTTCTCTCCGAAGCAGCGGGTCCACGCTGTCGGCTCCGCCGTCGAAGTCCGCCCCGCATACTTTTCACGGCGCGGCGCTTGGGCTGGCACACCAGTCTTACGAGGAAGCGTTCCAGCAGCACACACCTATGCTAGGGTTTCACCACCACCGCCAACAGCTCATGAGCGCTGATCAAATCTCAGAGGCGCTTCCCGGAGACTCCAGCGAGAACTATATGAGAAAACGCTACAGAGAAGATCTCTTCAAAGACGACGCCAACAACCAATCCTCGCAGCAAAACGAAACCGGCGATGGCCCTTCTTCTCCCAAACAATTCAAACCAGATGGTGGCGGCGGAGGCTCTTCCTCTTCTGCTTCCGGACTTCTCCGACCTTCCAATTTACTCCCCTCCGCTGCCATGTGGGCTGTGGCACCAGCACCCGCCGCAACTGTTGGTGGCAGCACAATTTGGATGCTTCCGGTGACCGCGGGCGGCGCGGTCAATTCCGCTTCAGACAATCAACACACGATGTGGCCTTTTCCTCCTCCACCACAAGCTGGTGGGAACGCGAATAATCCAGCTCAGTTGCATTTCATGCAGAGGTTCAATCTTCCAACAGGGGGTGTCGGTGTTGAATTCCAAGGTGGACGTAGTAGTGGTTTACAATTGGGTTCCATGTACCAACCACCCTCTCAGCATCTTGGGTTGGCCATGTCTGATTCCAACTTGGGTATGTTGGCGGCTCTCAATGCATACAGTAACAACAACAACAACAACAGAGGTTTCAATGTCAATTCTGATCACCAAACTCAAAATCATCATCATCATTCCTTGGAGCACCAACACCAAGCTCAGCCGCAACCTACTACAGACAGCGGAGGAGAAGATGGTCCTAATAGCTCGCAATAA 1476 0.5495 MELSDLQNNNNNNNRGTSTTHHPHHHQQEPSPSPPSSVFDGRQSAPFIMGSMSIQAGLTTTSSSSSSSNSSSSSSPSASVSAPAPSQLIDASLAIATRSDPPTHQLTIAAPTPAPVTTVANPPKRSTKDRHTKVDGRGRRIRMPATCAARVFQLTRELGHKSDGETIEWLLQQAEPAIIAATGTGTIPANFSTLNVSLRSSGSTLSAPPSKSAPHTFHGAALGLAHQSYEEAFQQHTPMLGFHHHRQQLMSADQISEALPGDSSENYMRKRYREDLFKDDANNQSSQQNETGDGPSSPKQFKPDGGGGGSSSSASGLLRPSNLLPSAAMWAVAPAPAATVGGSTIWMLPVTAGGAVNSASDNQHTMWPFPPPPQAGGNANNPAQLHFMQRFNLPTGGVGVEFQGGRSSGLQLGSMYQPPSQHLGLAMSDSNLGMLAALNAYSNNNNNNRGFNVNSDHQTQNHHHHSLEHQHQAQPQPTTDSGGEDGPNSSQ* 492
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g3396 491 MobiDBLite consensus disorder prediction 103 123 - -
Lja6g3396 491 MobiDBLite consensus disorder prediction 1 84 - -
Lja6g3396 491 PANTHER TRANSCRIPTION FACTOR TCP8 12 491 - -
Lja6g3396 491 MobiDBLite consensus disorder prediction 48 84 - -
Lja6g3396 491 MobiDBLite consensus disorder prediction 1 18 - -
Lja6g3396 491 MobiDBLite consensus disorder prediction 471 491 - -
Lja6g3396 491 MobiDBLite consensus disorder prediction 281 296 - -
Lja6g3396 491 ProSiteProfiles TCP domain profile. 127 181 IPR017887 -
Lja6g3396 491 MobiDBLite consensus disorder prediction 278 318 - -
Lja6g3396 491 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 12 491 IPR005333 GO:0003700
Lja6g3396 491 MobiDBLite consensus disorder prediction 446 491 - -
Lja6g3396 491 MobiDBLite consensus disorder prediction 103 135 - -
Lja6g3396 491 Pfam TCP family transcription factor 126 274 IPR017887 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g3396 Lja-Chr6 62080648 62082892 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g3396 87 491 TCP Transcription Factor Family AT1G58100 44.651 6.21e-67 218
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Lja6g3396 TCP 6e-39 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g3396 - - vra:106776202 436.417
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja6g3396 6 62080648 62082892 Lja6g3396 6 62080648 62082892 ECH