Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g3393 ATGGCCGCGTCGCTGTGGAGAGCTCGCGCCGCCCTCACCAATGCATTTCGCCGTTTCTCCTCCGCCGCCGCCGAGGTTACAACCACCGTTCCTCGCGATGCGCATGAGAGCATGATGTTTTCCGATATAAACTCACAAATTGGAAGCTGCATGCCTCTGTCTTCGATGCGAATCGGGACAATCATTCACAACATCGAGATGAACCCTGGGCAAGGAGGCAAGCTCGTACGAGCAGCAGGAACCTGTGCAAAGATTTTGAAAGAACCTACTTCAGCTTACTGTTTGATCCAGCTTCCTTCAGGTGTGAAGAAGTTGATTGATTCTCGATGCAGGGCCACTGTTGGTGTGGTGTCCAATCCAACCCATGGAGATCGCAAGCTGAGGAAGGCCGGGCATAGTAGGTGGCTCGGTCGGAGGCCGGTTGTTCGAGGAGTGGCTATGAATCCTGTTGATCATCCACACGGTGGTGGTGAGGGTAGAAGCAAGAGTAGTGGCCGTTGGGGTAAAGGATCTCGCACTCCTTGGGGTAAACCAACTAAGGGTGGCTTCAAAACTGGACCCCTCAAGCGCAAAAAATAG 579 0.5337 MAASLWRARAALTNAFRRFSSAAAEVTTTVPRDAHESMMFSDINSQIGSCMPLSSMRIGTIIHNIEMNPGQGGKLVRAAGTCAKILKEPTSAYCLIQLPSGVKKLIDSRCRATVGVVSNPTHGDRKLRKAGHSRWLGRRPVVRGVAMNPVDHPHGGGEGRSKSSGRWGKGSRTPWGKPTKGGFKTGPLKRKK* 193
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g3393 192 PANTHER RIBOSOMAL PROTEIN L2 27 191 IPR002171 GO:0003735|GO:0005840|GO:0006412
Lja6g3393 192 SMART Ribosomal_L2_C_2 45 178 IPR022669 GO:0003735|GO:0005840|GO:0006412
Lja6g3393 192 Gene3D - 38 117 IPR014722 -
Lja6g3393 192 Gene3D Ribosomal protein L2, domain 3 118 192 IPR014726 -
Lja6g3393 192 SUPERFAMILY Translation proteins SH3-like domain 47 182 IPR008991 -
Lja6g3393 192 ProSitePatterns Ribosomal protein L2 signature. 140 151 IPR022671 GO:0003735|GO:0005840|GO:0006412
Lja6g3393 192 PANTHER 39S RIBOSOMAL PROTEIN L2, MITOCHONDRIAL 27 191 - -
Lja6g3393 192 MobiDBLite consensus disorder prediction 146 192 - -
Lja6g3393 192 Pfam Ribosomal Proteins L2, C-terminal domain 46 176 IPR022669 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g3393 Lja-Chr6 62056956 62057943 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g3393 8 158 Cytoplasmic Ribosomal Protein Gene Family AT3G51190 36.943 4.79e-24 93.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g3393 - - gmx:100792418 291.582