Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g3392 ATGATGCATAACATTTTGATTTTCATATTCTTCTCCATCATCATCGTCTCCAATATTGCACCCTCTCATGGATACGATACGTTGGATCCTTCTGGCAATATTACCGTCACGTGGGATTTCTTGTCTGATAACGGAGACACATTCGATGTGAAGGTATCAATATACAACTTCCAATTATTCCGGCATGTGGAAGAGCCCGGATGGAAATTGGGTTGGTCTTGGAGAGGTGATGAGGTGATTTGGTCAATGACGGGAGCTGAGGCTACAGAGCAAGGGAATTGCACCAGATTTAGACAAAAGCAACCCCATTGTTGTGAGAAGGAACCAGCTATCATTGATCTTATGCCCGGAGCCCCTTATAACATGCAGTCTGCAAATTGCTGTAAAGGTGGGGTCCTAACATCCATGACACAAGATGTTACAAAATATGGTGCTACCTTCCTGATGAATTATCAGAAATCATCTATCTCTTTTCCTGATGGAGGCAATTTTAGCATGCCAGAAAAATTCACACTTGGAATTCCTGGTTATAGCTGTGCGATGCCAGTTCAAGTCCCACCAACTAGGTTTACCAATGATGGACGCAGATGGCAACAAGTCTTAGAGACATGGAATGTTACCTGTATCTACTCACAGTTTCTAGCATCACCTGCCCCAAAATGTTGTGTCTCCTTATCAGCATTCTACAATACGACAATTGTTCCTTGCCGCACATGCAGCTGTAATTGCCAAGGGCTACCAGGAGCAAATTGTGCCAATTCTGATGGATCTTCACTGTTGGAACTGCGACAACGAGCACAAGGCACAAAATCACCAGCACCAGTAGTGCAGTGTACAAATCACATGTGCCCCATTCGTGTTCACTGGCATGTGAAGCAAAGTTATAAAGAGTATTGGCGGGTCAAGATCACAATCACAAACCTTAATTTTGTCAGAAACTATTCCCATTGGAATTTGGTGGTGTTACATCCCAACTTGAGAAATATAACCCAAGTTTTCAGTTTCAACTACGAGTCACTGCCAAGTTATGGAAATCTCAATGATACAGGGATGTTTTGGGGGCTACAATATTACAATGACATGTTGCTTGCACATGGTGACAATGGGAATGTACAAACAGAGTTGTTACTTCACAAAGATCAAGGAGACTTTACCTTTAGAGGAGGATGGGCTTTTCCTAGAAAAATTTCATTCGATGGCGATGCATGTGTCATGCCATTACCTGATGAGTACCCGAGGCTCCCCAACACAGCTTCTATTGCTGCAACAAGACCTTTCATAGTTTTCATCTCAGTGTTGTTACTGCTAGTAATACTGTTCTAA 1323 0.4263 MMHNILIFIFFSIIIVSNIAPSHGYDTLDPSGNITVTWDFLSDNGDTFDVKVSIYNFQLFRHVEEPGWKLGWSWRGDEVIWSMTGAEATEQGNCTRFRQKQPHCCEKEPAIIDLMPGAPYNMQSANCCKGGVLTSMTQDVTKYGATFLMNYQKSSISFPDGGNFSMPEKFTLGIPGYSCAMPVQVPPTRFTNDGRRWQQVLETWNVTCIYSQFLASPAPKCCVSLSAFYNTTIVPCRTCSCNCQGLPGANCANSDGSSLLELRQRAQGTKSPAPVVQCTNHMCPIRVHWHVKQSYKEYWRVKITITNLNFVRNYSHWNLVVLHPNLRNITQVFSFNYESLPSYGNLNDTGMFWGLQYYNDMLLAHGDNGNVQTELLLHKDQGDFTFRGGWAFPRKISFDGDACVMPLPDEYPRLPNTASIAATRPFIVFISVLLLLVILF* 441
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g3392 440 Pfam COBRA-like protein 50 211 IPR006918 GO:0010215|GO:0031225
Lja6g3392 440 PANTHER PROTEIN COBRA 10 436 IPR006918 GO:0010215|GO:0031225
Lja6g3392 440 PIRSF COBRA 1 440 IPR006918 GO:0010215|GO:0031225
Lja6g3392 440 PANTHER COBRA-LIKE PROTEIN 6 10 436 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g3392 Lja-Chr6 62051260 62054455 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g3392 2 415 COBRA Gene Family AT1G09790 55.847 7.34e-166 472
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g3392 - - lang:109329241 671.389
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja6g3392 6 62051260 62054455 Lja6g3392 6 62051260 62054455 ECH