Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g3391 ATGGCTGTACATAGGAAATCTCTTCTTATTGCTTACTCGCCAGAAATTGTAGATGGGCAGCCGATTTATGTTTCTTCGAACTGTCTTCCTATCAAGGCCTTGAAAAAATATGAACCTGCAGGTCACTCTTTCCATTCTGTCGCACTCAAGCTCCGTGGTGTCCAGGAAGATAATAAAGAAGCTGATAATAAAAAAGTAGCTGATGATAAGGAACAGACATACCTTCCATCTGATTCTTATAGCAGCAAGAGCAAGAAGAAATCTGGGTCTGGAGACAAGCAGCAAGATCACTATGCATTATTGGGTCTGAGCCATCTAAGGTATCTTGCTACAGAGGATCAAATACGTAAAAGCTATCGTGAAACTGCCTTGAGGTTTCATCCTGACAAACAGGCTTCTCTTCTTCTCGCTGAGGAAACTGAAGCTGCGAAGCAGGCAAAGAAGGATGAAATAGAAACTCACTTCAAGGCAATCCAAGAAGCATATGAAGTGTTGGTTGATCCTCTGAAGAGAAGAATTTATGATTCTACTGATGAGTTTGATGATGAAATCCCCACAGACTGTGCTCCACAAGACTTCTTCAAGGTGTTTGGCCCTGCTTTTATGAGGAATGGGCGGTGGTCAGTTAACCAGTCAGTTCCATCACTGGGTGATGATAATACTCCATTGAAAGAAGTTGATACTTTCTATGATTTTTGGTACTCCTTCAAAAGCTGGAGGGAGTTTCCCCATGATGAAGAGTTTGATCTTGAGCAAGCTGAATCTCGAGACCATAGGAGGTGGATGGAAAGGCAGAATGCAAAACTGTCTGAAAAGGCTAGGAAGGAAGAGTATGCAAGGGTACGCACACTTGTTGATAATGCTTATAAGAGAGACCCCAGAATATTGAGAAGAAAGGAATTGCAAAAAGCTGAGAAGCAAAGGAAAAAGGAGGCTAAGTTCCTGGAAAAGAAGTTGCAGGAAGAAGAAGCAGTCAGAATTGCAGAAGAGGAGAGGCGACGAAAAGAAGAGGAAGATAGACAAGCTGCAGAAGCTGCTTCACAACAGAAGAAGGTGAAGGAGAAGGAGAAAAAGCTGTTGCGGAAGGAACGAGCACGCCTTCGAACTCTCTCAGGACCTATCCTGTCACAGCATTTACTGGAAATTTCTGAAGATGATGTCGAAAAGCTTTGCATGTCGCTTGATATTGAGCACTTGAGGGGTTTGTGTGAGAAAATGGAAGACAGAAAGGAGTTAGAGCAAGCAGAAGTTATAAGAGATGCACTGAGTTGTAAGGAAGGCATGGCTGATGTGAAATATGAGAAAACTATTCAACAAAATGGTTCTATCAAGGCTAATGGCAGCAGGGGTTCAAAAAGCAAGACTGAGAAGCGGGAGAAACCTTGGAGCAAAGAAGAGATTGAGCTTTTGAGGAAAGGAATGCAAAAATATCCCAAAGGAACTTCTCGGAGATGGGAGGTTATCTCAGAATACATTGGTACTGGAAGATCAGTTGATGAAATTATGAAGGCAACTAAAACTGTTCTCCTCCAGAAGCCTGATTCATCCAAAGCTTTTGACGCTTTTCTTGAGAAAAGGAAACCTGCCGTGTCAATTGCATCTCCGCTGACAACCAGAGAAGAAGTGGAAGGGGCACCAACAAATCCTGAGACTGGAAAGCCTGAAAATAGTGATGCTTCCTCAAAAAAAGACAACTTGGAAGATTCCCAAGGCAAAAGTACAGATGATCAGAACTCTACTGCTGTTGCTGCAAATGGAGTTTCTTCCTCTAGTTCAGATCAAGACATATGGTCTGCAGTGCAGGAAAGAGCACTTGTTCAAGCTTTAAAAGCCTTTCCAAAGGAAGCTAGCCAGAGATGGGAACGGGTAGCAGCAGCTGTACCTGGGAAGACTGTGAATCAGTGCAAGAAAAAGTTTACCGCGATGAAGGAGAGTTTCAGGAATAAGAAAGGTGCAGTTTAA 1962 0.4292 MAVHRKSLLIAYSPEIVDGQPIYVSSNCLPIKALKKYEPAGHSFHSVALKLRGVQEDNKEADNKKVADDKEQTYLPSDSYSSKSKKKSGSGDKQQDHYALLGLSHLRYLATEDQIRKSYRETALRFHPDKQASLLLAEETEAAKQAKKDEIETHFKAIQEAYEVLVDPLKRRIYDSTDEFDDEIPTDCAPQDFFKVFGPAFMRNGRWSVNQSVPSLGDDNTPLKEVDTFYDFWYSFKSWREFPHDEEFDLEQAESRDHRRWMERQNAKLSEKARKEEYARVRTLVDNAYKRDPRILRRKELQKAEKQRKKEAKFLEKKLQEEEAVRIAEEERRRKEEEDRQAAEAASQQKKVKEKEKKLLRKERARLRTLSGPILSQHLLEISEDDVEKLCMSLDIEHLRGLCEKMEDRKELEQAEVIRDALSCKEGMADVKYEKTIQQNGSIKANGSRGSKSKTEKREKPWSKEEIELLRKGMQKYPKGTSRRWEVISEYIGTGRSVDEIMKATKTVLLQKPDSSKAFDAFLEKRKPAVSIASPLTTREEVEGAPTNPETGKPENSDASSKKDNLEDSQGKSTDDQNSTAVAANGVSSSSSDQDIWSAVQERALVQALKAFPKEASQRWERVAAAVPGKTVNQCKKKFTAMKESFRNKKGAV* 654
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g3391 653 SUPERFAMILY Chaperone J-domain 94 202 IPR036869 -
Lja6g3391 653 MobiDBLite consensus disorder prediction 440 462 - -
Lja6g3391 653 SMART dnaj_3 95 170 IPR001623 -
Lja6g3391 653 MobiDBLite consensus disorder prediction 55 94 - -
Lja6g3391 653 CDD DnaJ 96 167 IPR001623 -
Lja6g3391 653 Pfam Myb-like DNA-binding domain 460 501 IPR001005 -
Lja6g3391 653 Coils Coil 396 416 - -
Lja6g3391 653 MobiDBLite consensus disorder prediction 572 594 - -
Lja6g3391 653 MobiDBLite consensus disorder prediction 329 357 - -
Lja6g3391 653 Pfam DnaJ domain 96 175 IPR001623 -
Lja6g3391 653 PRINTS DnaJ domain signature 101 119 IPR001623 -
Lja6g3391 653 PRINTS DnaJ domain signature 119 134 IPR001623 -
Lja6g3391 653 PRINTS DnaJ domain signature 150 170 IPR001623 -
Lja6g3391 653 ProSiteProfiles Myb-like domain profile. 454 509 IPR001005 -
Lja6g3391 653 CDD SANT 461 503 IPR001005 -
Lja6g3391 653 PANTHER DNAJ DOMAIN, MYB-LIKE DNA-BINDING DOMAIN PROTEIN-RELATED 8 650 - -
Lja6g3391 653 ProSitePatterns Nt-dnaJ domain signature. 155 174 IPR018253 -
Lja6g3391 653 ProSiteProfiles Myb-like domain profile. 589 643 IPR001005 -
Lja6g3391 653 Coils Coil 298 370 - -
Lja6g3391 653 ProSiteProfiles dnaJ domain profile. 96 178 IPR001623 -
Lja6g3391 653 CDD SANT 597 643 IPR001005 -
Lja6g3391 653 SUPERFAMILY Homeodomain-like 592 642 IPR009057 -
Lja6g3391 653 Gene3D - 587 653 - -
Lja6g3391 653 SUPERFAMILY Homeodomain-like 460 504 IPR009057 -
Lja6g3391 653 SMART sant 593 645 IPR001005 -
Lja6g3391 653 SMART sant 458 511 IPR001005 -
Lja6g3391 653 MobiDBLite consensus disorder prediction 533 594 - -
Lja6g3391 653 Gene3D - 453 512 - -
Lja6g3391 653 MobiDBLite consensus disorder prediction 556 571 - -
Lja6g3391 653 Gene3D DnaJ domain 79 188 IPR036869 -
Lja6g3391 653 MobiDBLite consensus disorder prediction 55 72 - -
Lja6g3391 653 PANTHER DNAJ HOMOLOG SUBFAMILY C MEMBER 2 8 650 IPR044634 GO:0006450|GO:0030544|GO:0043022|GO:0051083
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g3391 Lja-Chr6 62042256 62046077 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g3391 97 296 C2H2 Transcription Factor Family AT1G74250 29.707 3.19e-18 87.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lja6g3391 DnaJ 4.3e-17 CL0392
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g3391 K09522 - gmx:100814414 919.842