Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g3382 ATGCAACCAAGCGCCAAGCCTCCTCAAACCAATTGGTCGCAACACGCCAATGCTCAACACAATTTCGCATCCCAAGCCAAGTTTCTGAGCTCCAATTTTCTCTTCTCTCTTCCAACTCACAAGAGCCCTTCCTATCAAGAACCACCCCCTGGGACTGGGTCTCAGAGGTTTGTATTACGACAAAGTCAAGGTTCAGAAAGAGTACAAGTTGACAAGGCTTGGCTTGCTATTACAACTCCACAGAATTCTACCAGGAACTATGTCCAACCTGGAGAAACTGTTAAAGTTACTCCTCAGCTTCATGAAAGCATGGCAGCAACTTCCTTCCAAGGAAGCCATGAAAACAATATGCCTAGGCATTCTGATGTCACCACTACTCCAATTGTCATTAATCATAGATCTCAGGTTTTGGATAGTTCAGTGAACAACCATACAAAGTACACAGACCAAATCAATGAGTCTACAAAATGCATGCCTGTTCATATTGATGATGATGATGACATACTTGAGACCATTGATGTTGACCAAATCGTGGAACAATACCAGTCTAGTTGCACTCCCCAACCATCAATGTCCAGGCTTCCTCCAATTACACCAACTGCAGATAAAGATAATTTTGCTGGACATGATAACCTTTTGCCACCAGAGCTGTGTGTGGACTGCAGCCATGGTTGCAAGTTAGGGCATTGCCCTGAAGCAGCAAGTCACTTGCAGGAATTGAAGGATAATCTAATTGTTATCTCTAATGAACTACTTGACAATGTTGAGAACCTCAGTTCTACAGACATATCCAAACTTCACCAAGATAGGTCACAGCTCAAGAAGCAAATTCAGCAGCTTGAAAAATATATTCACTCCAGTAATCTTGCTGAGGAAAGACAAAAGTCACATTTTTCTGCATCAACTGCGCCGCCTACATCTTTCGTGTATGAAACACCTCGGCAACCTTTCCTTAGTAGTGGACCAAAGACATATGATTCCCAGGCTTATATGGGTAATGGGACATATGGGTCATCATTCCAGTCTGTTTCATTCTCTTCTGTAGATAGGTATGGTATGCCATCAGGTCCAGTAGAGAGGGAAGCATTCATCCCAAAAAATATTGAAGTTAATTACATCGAAGGTTCTGGAGACAAACGATGGAGCAGCCAAGATTTTCCTTGGACAAAAGACTTGGAGGTTAATAATAAAAGAGTATTTGGGAATCACTCATTTCGTCCCAATCAAAGAGAGGTCATTAATGCAACAATGAGCGGATGTGATGTTTTTGTTTTGATGCCCACTGGTGGAGGAAAGAGTCTGACTTATCAGCTACCAGCTCTTATTTGTCCTGGTATAACATTAGTAATTTCTCCCCTTGTCTCCCTTATTCAAGATCAAATAATGCACCTATTGCAGGCAAATATACCTGCTGTTTGCTTAAGTGCCAACATAGAATGGTCTGAACAACAAGAGATCCTTAGAGAACTTAATTCTGATTACTGTAAATACAAGTTGTTGTATGTGACACCCGAAAAGGTTGCAAGAAGCGATGTTCTTCTGCGACAATTGGAGAATTTACATGTCCGTGAGTTGCTGTCCAGGATTGTAATTGATGAGGCTCACTGTGTGAGCCAATGGGGGCATGATTTTAGACCAGATTATCAGGGACTTGGTATTTTGAAACAGAAATTCCCAAATACTCCTGTTTTAGCTTTAACAGCGACAGCAACAGCTAGTGTAAAGGAAGATGTTGTGCAAGCACTTGGTCTCATTAACTGCATTATTTTCCGGCAAAGTTTTAATCGACCAAACTTATGGTATTCAGTTGTCCCCAAGACCAAAAAGTGTGTGGAGGACATTGACAAATTCATTAGGGAAAATCATTTTGATGAATGTGGCATTATCTATTGTCTTTCACGAATGGACTGTGAAAAGGTTGCTGAAAAATTACAGGAATGTGGGCATAAATGTACATATTATCATGGGAACATGGATCCTGCTCAACGTGCTTTTGTTCAAAAGCAATGGAGTAAAGATGAGGTCAATATAATTTGCGCTACTGTGGCCTTTGGCATGGGTATTAACAAGCCCGATGTTCGCTTTGTAATCCATCATTCGCTCCCAAAATCTATTGAAGGCTATCATCAGGAATGTGGACGAGCTGGTAGAGATGGTCAACGTTCATCTTGTGTATTATATTATAACTATGGTGATTATATACGAGTTAAGCATATGTTGAGTCAAGGAGCAATAGAGCAAAGCTCCATGACATCTGGATACAATCGTTCAAATATGACAAATTCAGGAAGAATACAGGAAACAAACTCAGAAAACCTTTTGCGAATGGTCAGTTATTGTGAAAATGATGTTGATTGTCGGCGTCTTCTTCAGCTTGCTCATTTTGGGGAGAAATTTGATTCTTCAACCTGTCAGAAAACATGTGATAATTGCTTGAGAGTTACAAGTTTCGTTGAGAAAGATGTCACAGGGATTGCAAAAGAACTGGTTGAACTAATTAAGCTAACGGGACAAAGGTTCTCTTCGTCTCATATATTAGAAGTGTATCGTGGTTCCTTAAGCCAGTTGGTCAAGAAACACCGGCATGAGACTGTGAGGCTGCATGGTGCTGGGAAGCCTCTAGCTAAGGGTGAGGCTTCCCGTGTATTGCATCGTCTGGTTGTTGAAGATATTATTTTGGAGGAGGTAAAAAAAAGTGATATTTATGGATCAGTATCTTCAGTATTGAAGGTAAATGAGCACAAGGTCCGTAATTTGTTGTCTGGTGGCCAGAGAATTGTATTGAGATTCCCGTCCCCTGTAAAGGCATCAAAGCATGGGAAATGTGATTTAACTCCAGCTAAAGGCCCTCTTACATCTGGGAAGCTGAATCCTCCAGTAATTGACATGACTGACCAACCTCAGACTGAAGTGGACTTGAATCTTTCAGCAAAGTTATACAGTGCTTTGCGGATGTTGCGGACAACTCTTGTTAGAGAAGCTGCAGATGGTGTTATGGCTTACCACATATTTGGTAATGCTACGTTGCAGCAAATAAGCAAGAGAGTGCCAAGAACAAAAGAAGAACTTCTTGATATCAACGGCATTAGCAAGACTAAAGTAAGCAAGTATGGGGATCGGTTACTGGAAACCATTGAAGACACCATAAATGAATATTACAAGTTGGACAAAAGCAGCAGCGGCAGCAAAGGCAGTGCTGATTCCGCCAAAAGGCGACGAGAGGCAGCAAGTGGAGATGCATCTGCAAATGCCGAAGATGACTTCACCAAAAGCACTGGTCGATCAAAGAAAATGACAGTGAAGAGACAGACTAAAAGAACTGAGATTTATGATTCTGAAGAAGAAGATTATTACCATGGATGCCTTGATGAAGAACTAGACTTTGACAACTTGGAAAACGAAGCATTAAATAAAACACCTTGTACAAATGCCGGAGGAAGGGTACTACCTCAATGGACAGGTTCTTGA 3468 0.4123 MQPSAKPPQTNWSQHANAQHNFASQAKFLSSNFLFSLPTHKSPSYQEPPPGTGSQRFVLRQSQGSERVQVDKAWLAITTPQNSTRNYVQPGETVKVTPQLHESMAATSFQGSHENNMPRHSDVTTTPIVINHRSQVLDSSVNNHTKYTDQINESTKCMPVHIDDDDDILETIDVDQIVEQYQSSCTPQPSMSRLPPITPTADKDNFAGHDNLLPPELCVDCSHGCKLGHCPEAASHLQELKDNLIVISNELLDNVENLSSTDISKLHQDRSQLKKQIQQLEKYIHSSNLAEERQKSHFSASTAPPTSFVYETPRQPFLSSGPKTYDSQAYMGNGTYGSSFQSVSFSSVDRYGMPSGPVEREAFIPKNIEVNYIEGSGDKRWSSQDFPWTKDLEVNNKRVFGNHSFRPNQREVINATMSGCDVFVLMPTGGGKSLTYQLPALICPGITLVISPLVSLIQDQIMHLLQANIPAVCLSANIEWSEQQEILRELNSDYCKYKLLYVTPEKVARSDVLLRQLENLHVRELLSRIVIDEAHCVSQWGHDFRPDYQGLGILKQKFPNTPVLALTATATASVKEDVVQALGLINCIIFRQSFNRPNLWYSVVPKTKKCVEDIDKFIRENHFDECGIIYCLSRMDCEKVAEKLQECGHKCTYYHGNMDPAQRAFVQKQWSKDEVNIICATVAFGMGINKPDVRFVIHHSLPKSIEGYHQECGRAGRDGQRSSCVLYYNYGDYIRVKHMLSQGAIEQSSMTSGYNRSNMTNSGRIQETNSENLLRMVSYCENDVDCRRLLQLAHFGEKFDSSTCQKTCDNCLRVTSFVEKDVTGIAKELVELIKLTGQRFSSSHILEVYRGSLSQLVKKHRHETVRLHGAGKPLAKGEASRVLHRLVVEDIILEEVKKSDIYGSVSSVLKVNEHKVRNLLSGGQRIVLRFPSPVKASKHGKCDLTPAKGPLTSGKLNPPVIDMTDQPQTEVDLNLSAKLYSALRMLRTTLVREAADGVMAYHIFGNATLQQISKRVPRTKEELLDINGISKTKVSKYGDRLLETIEDTINEYYKLDKSSSGSKGSADSAKRRREAASGDASANAEDDFTKSTGRSKKMTVKRQTKRTEIYDSEEEDYYHGCLDEELDFDNLENEALNKTPCTNAGGRVLPQWTGS* 1156
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g3382 1155 Gene3D HRDC domain 969 1056 IPR044876 -
Lja6g3382 1155 CDD SF2_C_RecQ 596 728 - -
Lja6g3382 1155 Coils Coil 263 283 - -
Lja6g3382 1155 Pfam RQC domain 819 932 IPR018982 GO:0006260|GO:0006281|GO:0043138
Lja6g3382 1155 SMART hrdc7 973 1055 IPR002121 GO:0003676
Lja6g3382 1155 Gene3D - 596 814 IPR027417 -
Lja6g3382 1155 SUPERFAMILY HRDC-like 976 1049 IPR010997 GO:0000166|GO:0044237
Lja6g3382 1155 ProSitePatterns DEAH-box subfamily ATP-dependent helicases signature. 527 536 IPR002464 -
Lja6g3382 1155 SMART ultradead3 401 604 IPR014001 -
Lja6g3382 1155 Gene3D - 819 929 IPR036388 -
Lja6g3382 1155 ProSiteProfiles HRDC domain profile. 973 1055 IPR002121 GO:0003676
Lja6g3382 1155 SMART helicmild6 638 719 IPR001650 -
Lja6g3382 1155 MobiDBLite consensus disorder prediction 1056 1108 - -
Lja6g3382 1155 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 413 588 IPR014001 -
Lja6g3382 1155 PANTHER DNA HELICASE RECQ FAMILY MEMBER 103 1123 - -
Lja6g3382 1155 MobiDBLite consensus disorder prediction 1066 1080 - -
Lja6g3382 1155 CDD DEXHc_RecQ 396 595 - -
Lja6g3382 1155 SMART RQC_2 821 932 IPR018982 GO:0006260|GO:0006281|GO:0043138
Lja6g3382 1155 PANTHER ATP-DEPENDENT DNA HELICASE Q-LIKE 4A 103 1123 - -
Lja6g3382 1155 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 594 862 IPR027417 -
Lja6g3382 1155 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 380 737 IPR027417 -
Lja6g3382 1155 TIGRFAM recQ_fam: ATP-dependent DNA helicase, RecQ family 397 872 IPR004589 GO:0004386|GO:0006310
Lja6g3382 1155 Pfam Helicase conserved C-terminal domain 613 718 IPR001650 -
Lja6g3382 1155 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 613 762 IPR001650 -
Lja6g3382 1155 Pfam HRDC domain 977 1045 IPR002121 GO:0003676
Lja6g3382 1155 Pfam RecQ zinc-binding 730 812 IPR032284 -
Lja6g3382 1155 Gene3D - 367 595 IPR027417 -
Lja6g3382 1155 Pfam DEAD/DEAH box helicase 407 575 IPR011545 GO:0003676|GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g3382 Lja-Chr6 61992395 61999973 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g3382 627 732 Eukaryotic Initiation Factors Gene Family AT3G19760 22.642 3.95e-07 52.0