Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g3377 ATGAGCCTTCGGGTGATCAGATACATTTCAGCTATCTACTGGTCCATCACCACCATGACTACAGTAGGTTATGGTGACCTCCATGATGTGAACACCATGGAAATGATCTTCATTATTTTCTACATGCTCTTCAACCTTGGTCTAACTGCTTACTTGATTGGTAACATGACAAATCTTGTTGTTGAAGGAACTCGCCGTACCATGGAATTTAGAAATAGCATTGAAACAGCATCGAACTTTGTGTGCCGAAATCGGTTGCCTCCAAGATTAAAAGAGCAGATCCTGGGGTACATGTGTCTAAGATTTAAGGCAGAGAGCTTGAATCAGCATCGCCTTATCGAACAGCTACCAAAGTCGATTTGCAAAAGCATCTGCCAGCATTTGTTTTTCCCAACTGTAGAGAAAGTCTATCTCTTCAAAGGAGTCTCAAAAGAAATTCTTGTGTCCCTTGTTGCAAAAATGAAGGCAGAGTACATACCCCCTAGAGAGGATGTTATCATGCAAAATGAAGCACCAGATGATGTTTACATTATAGTGTCAGGAGAAGTGGAAATCATTGATAATGTAATGGAAAGAGAGAGAATTTTAGGGACTTTACAAACAGAAGACATGTTTGGAGAAGTTGGTGCACTTTGTTGCAGACCTCAGAACTTTACCTACAGAACCAAGACTCTCACACAGCTCCTGAGGCTGAAAACCAGTGTTCTTATAGAAGCAATGCAAATTCAAAAAGAAGACAACATACAAATACTTAAAAATTTCCTTCAGCATTTCAAGCAGCTTAAGGATCTCAGTATCAGAGATTTGATGGTGGAGAATTTGGAAGAAGAGGACCCTAACATGGCTGTGAACTTGTTAACTGTGGCCTCCACAGGCAATGCTGCTTTTCTTGAGGAGCTTCTAAGAGCAGGATTGGATCCAGACATTGGAGACTCCAAAGGAAAAACCCCCTTGCACATAGCAGCATCAAATGGGCATGAAGAGTGTGTTAGAGTCTTACACAGGCACACATGCAACATACATATAAGAGATATCAATGGTGACACAGCAATATGGGATGCTATAGCATCAAAACACTACTCCATATTCCGGATCCTCTACCAGCTAGCTGCTCTCTCTGATCCACACACAGCAGGCAATCTCCTATGTACAGCAGCAAAAAGAAATGATTTAATAGTCATGAATGAGCTTTTGAAGCAAGGACTAAACATTGATTCGAAAGATCGCCATGGTAACACAGCTATCCAAATTGCCATGACAGAAAATCATGTAGACATGGTTCAGTTGCTTGTCATGAATGGCGCAGATGTCTCGGATGTGCATACTAATGAATTTTCTGCATTCAACTTAAATGAAATGCTGCAGAAGCGTGAAGTTGGACACCTAATTAATGTAAATGAGGCCATGTCCAGTGAGGATGTATTGAAGGGGCAACAATATCAAGAAGAGAAGGAGCATATTAGGGGAAGATCTAATGGACTAGTATGTCCAAGAGTAAGCATATATAGAGGTCACCCTGTAGTGAAAAGAGAAAGAGGTGTAATGGAAGCTGGGAAACTAATAAGGTTGCCTGATTCATTAGAGGAGCTCAAAACTATTGCAGGTGAAAAATTTGGATTTGATGCAAGGGATGCAATGGTGACAAATGATGAAGGAGCAGAAATAGACTGTATTGATGTGATCAGAGATAATGATAAAGTTTATATTTTTGAATAG 1716 0.4038 MSLRVIRYISAIYWSITTMTTVGYGDLHDVNTMEMIFIIFYMLFNLGLTAYLIGNMTNLVVEGTRRTMEFRNSIETASNFVCRNRLPPRLKEQILGYMCLRFKAESLNQHRLIEQLPKSICKSICQHLFFPTVEKVYLFKGVSKEILVSLVAKMKAEYIPPREDVIMQNEAPDDVYIIVSGEVEIIDNVMERERILGTLQTEDMFGEVGALCCRPQNFTYRTKTLTQLLRLKTSVLIEAMQIQKEDNIQILKNFLQHFKQLKDLSIRDLMVENLEEEDPNMAVNLLTVASTGNAAFLEELLRAGLDPDIGDSKGKTPLHIAASNGHEECVRVLHRHTCNIHIRDINGDTAIWDAIASKHYSIFRILYQLAALSDPHTAGNLLCTAAKRNDLIVMNELLKQGLNIDSKDRHGNTAIQIAMTENHVDMVQLLVMNGADVSDVHTNEFSAFNLNEMLQKREVGHLINVNEAMSSEDVLKGQQYQEEKEHIRGRSNGLVCPRVSIYRGHPVVKRERGVMEAGKLIRLPDSLEELKTIAGEKFGFDARDAMVTNDEGAEIDCIDVIRDNDKVYIFE* 572
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g3377 571 PANTHER POTASSIUM CHANNEL AKT1 5 571 IPR045319 GO:0005249|GO:0006813
Lja6g3377 571 ProSiteProfiles Ankyrin repeat region circular profile. 410 438 - -
Lja6g3377 571 Gene3D - 4 74 - -
Lja6g3377 571 ProSiteProfiles KHA domain profile. 498 571 IPR021789 -
Lja6g3377 571 SUPERFAMILY Voltage-gated potassium channels 7 61 - -
Lja6g3377 571 ProSiteProfiles cAMP/cGMP binding motif profile. 138 257 IPR000595 -
Lja6g3377 571 SMART cnmp_10 138 255 IPR000595 -
Lja6g3377 571 Gene3D Jelly Rolls 106 279 IPR014710 -
Lja6g3377 571 PANTHER POTASSIUM CHANNEL AKT2/3-LIKE 5 571 - -
Lja6g3377 571 ProSiteProfiles Ankyrin repeat profile. 410 442 IPR002110 GO:0005515
Lja6g3377 571 SMART ANK_2a 380 406 IPR002110 GO:0005515
Lja6g3377 571 SMART ANK_2a 346 377 IPR002110 GO:0005515
Lja6g3377 571 SMART ANK_2a 313 342 IPR002110 GO:0005515
Lja6g3377 571 SMART ANK_2a 280 309 IPR002110 GO:0005515
Lja6g3377 571 SMART ANK_2a 410 439 IPR002110 GO:0005515
Lja6g3377 571 CDD CAP_ED 138 251 IPR000595 -
Lja6g3377 571 Pfam Ion channel 7 60 IPR013099 -
Lja6g3377 571 SUPERFAMILY cAMP-binding domain-like 65 257 IPR018490 -
Lja6g3377 571 Gene3D - 282 464 IPR036770 -
Lja6g3377 571 SUPERFAMILY Ankyrin repeat 245 450 IPR036770 -
Lja6g3377 571 ProSiteProfiles Ankyrin repeat region circular profile. 313 344 - -
Lja6g3377 571 ProSiteProfiles Ankyrin repeat profile. 313 345 IPR002110 GO:0005515
Lja6g3377 571 PRINTS EAG/ELK/ERG potassium channel family signature 8 25 IPR003938 GO:0005249|GO:0006813|GO:0016020
Lja6g3377 571 PRINTS EAG/ELK/ERG potassium channel family signature 52 61 IPR003938 GO:0005249|GO:0006813|GO:0016020
Lja6g3377 571 PRINTS EAG/ELK/ERG potassium channel family signature 34 45 IPR003938 GO:0005249|GO:0006813|GO:0016020
Lja6g3377 571 Pfam Cyclic nucleotide-binding domain 158 241 IPR000595 -
Lja6g3377 571 Pfam Ankyrin repeats (3 copies) 289 368 IPR002110 GO:0005515
Lja6g3377 571 Pfam Ankyrin repeats (3 copies) 373 438 IPR002110 GO:0005515
Lja6g3377 571 PRINTS Ankyrin repeat signature 426 440 IPR002110 GO:0005515
Lja6g3377 571 PRINTS Ankyrin repeat signature 314 329 IPR002110 GO:0005515
Lja6g3377 571 Pfam KHA, dimerisation domain of potassium ion channel 497 569 IPR021789 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g3377 Lja-Chr6 61945853 61949565 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g3377 6 336 Ion Channels AT4G22200 74.030 8.73e-175 506
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g3377 K21867 - gmx:100798422 942.184