Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g3374 ATGGAGAGAAATTTCAGTTCATATAATCATCAACTAGACTCTGGCTTGAACAAGAGCTACAAGAAGCACCAGCATGATCATTCAGAGCAGCAGCATCTTAAAGAAGATTGTATGTCTCCCCCTTTCAGCCTGCGCAATGTTTCAAAGCTCATTCTTCCTCCACTTGGTGTGTCAACAAAACAGAATCCAGTTAACTCCAAAGGGTGGATCATATCTCCAATGGATTCCAGATACAGGTGCTGGGAGAGTCTTATGGTTGTTCTTGTAGCTTATTGTGCATGGGTGTGGCCCTTTGAAGTTGCTTTCATGCGCTCTTCTCCAAATATGAAAATCCACACTGTGGACAATGTTGTTGATCTTTTCTTTGCCATTGATATTGTCTTGACATTCTTTGTGGCTTATATTGATCGAACTACTCATCTACTAGTTCGTGACTCAAAAAAGATTGTAGTGAGGTACTTGTCAACATGGTTTCTGATGGATGTGGCATCAACCATACCGTATGAGGCAATTGGGTACTTGTTCACTGGAAAACACAAACTCAGTCTCCCTTACTTCCTGCTCGGCATGCTCAGATTGTGGCGGATTAGACGTGTCAAGCAATTCTTTACAAGGCTTGAGAAAGATATCAGGTTCAGCTATTTCTGGGTCCGATGTGCTAGGCTTCTTTCTGTAACACTTTTTTCAGTTCATTGTGCTGGGTGTCTATATTACCTGCTAGCTGAGTACTACCCCCACCAAGGAAAGACATGGATTGGAGCTGCGTTCCCAAACTTCCGAGAGACGAGCCTTCGGGTCAGATACATTTCAGCTATCTACTGGTCCATCACCACCATGACTACAGTAGGTTATGGTGACCTCCATGCTGTGAACACCATGGAAATGATCTTCATTATTTTCTACATGCTCTTCAACCTTGGTCTAACTGCTTACTTGATTGGTAACATGACAAATCTTGTTGTTGAAGGAACTCGCCGTACCATGGAATTTAGAAATAGTATTGAAGCAGCATCGAACTTTGTGTGTCGAAATCGGTTGCCTCCAAGGTTAAAAGAGCAGATCCTGGGGTACATGTGTCTAAGATTTAAGGCAGAGAGCTTGAATCAGCATCGCCTTATCGAACAGCTACCAAAGTCTATTTGCAAAAGCATCTGCCAGCATTTGTTTTTCCCAACTGTAGAGAAAGTCTATCTCTTCAAAGGAGTCTCAAAAGAAATTCTTGTGTCCCTTGTTGCAAAAATGAAGGCAGAGTACATACCCCCTAGAGAGGATGTTATCATGCAAAATGAAGCACCAGATGATGTTTACATTGTAGTGTCTGGAGAAGTGGAAATCATTGATAATGTAATGGAAAGAGAGAGAATTTTAGGGACTTTACAAACAGAAGACATGTTTGGAGAAGTTGGTGCACTTTGTTGCAGACCTCAGAACTTTACCTACAGAACCAAGACTCTCACACAGCTCCTGAGGCTGAAAACCAGTGTTCTTATAGAAGCAATGCAAATTAAAAAAGAAGACAACATACAAATACTCAAAAATTTCCTTCAGCATTTCAAGCAGCTTAAGGATCTCAGTATCAGAGACTTGATGGTGGAGAATGTGGAAGAAGAGGACCCTAACATGGCTGTGAACTTGTTAACTGTGGCCTCCACAGGCAATGCTGCTTTTCTTGAGGAGCTTCTGAGAGCAGGTTTGGATCCAGACATTGGAGACTCCAAAGGGAAAACCCCCTTGCACATAGCAGCATCAAATGGGCATGAAGAGTGTGTTAGAGTCTTACTCAGGCACACATGCAACATACATATAAGAGATATCAATGATGACACAGCAATATGGGATGCTATAGCATCAAAACACTACTCCATATTCCGGATCCTCTACCAGCTAGCTGCTCTCTCTGATCCACACACAGCAGGCAATCTCCTATGTACAGCAGCAAAAAGAAATGATTTAATAGTCATGAATGAGCTTTTGAAGCAAGGACTAAACATTGATTCGAAAGATCGCCGTGGTAACACAGCTATCCAAATTGCCATGACAGAAAATCATGTAGACATGGTTCAGTTGCTTGTCATGAACGGCGCAGATGTCTCGGATGTGCATACTAATGAATTTTCTGCATACACGTTAAATGAAATGCTGCAGAAGCGTGAAGTTGGACACCTAATTAATGTAAATGAGGCCATGTCCAGTGAGGATGTATTGAAGGGGCAACAATATCAAGAAGAGAAGGAGCATATTAGGGGAAGATCTAATGGACTAGTATGTCCAAGAGTAAGCATATATAGAGGTCACCCTGTAGTGAAAAGAGAAAGAGGTGTAATGGAAGCTGGGAAACTAATAAGGTTGCCTGATTCATTAGAGGAGCTCAAAACTATTGCAGGTGAAAAATTTGGATTTGATGCAAGGGATGCAATGGTGACAAATGATGAAGGAGCAGAAATAGACTGTATTGATGTGATCAGAGATAATGATAAAGTTTATATTTTTGAATAG 2496 0.4151 MERNFSSYNHQLDSGLNKSYKKHQHDHSEQQHLKEDCMSPPFSLRNVSKLILPPLGVSTKQNPVNSKGWIISPMDSRYRCWESLMVVLVAYCAWVWPFEVAFMRSSPNMKIHTVDNVVDLFFAIDIVLTFFVAYIDRTTHLLVRDSKKIVVRYLSTWFLMDVASTIPYEAIGYLFTGKHKLSLPYFLLGMLRLWRIRRVKQFFTRLEKDIRFSYFWVRCARLLSVTLFSVHCAGCLYYLLAEYYPHQGKTWIGAAFPNFRETSLRVRYISAIYWSITTMTTVGYGDLHAVNTMEMIFIIFYMLFNLGLTAYLIGNMTNLVVEGTRRTMEFRNSIEAASNFVCRNRLPPRLKEQILGYMCLRFKAESLNQHRLIEQLPKSICKSICQHLFFPTVEKVYLFKGVSKEILVSLVAKMKAEYIPPREDVIMQNEAPDDVYIVVSGEVEIIDNVMERERILGTLQTEDMFGEVGALCCRPQNFTYRTKTLTQLLRLKTSVLIEAMQIKKEDNIQILKNFLQHFKQLKDLSIRDLMVENVEEEDPNMAVNLLTVASTGNAAFLEELLRAGLDPDIGDSKGKTPLHIAASNGHEECVRVLLRHTCNIHIRDINDDTAIWDAIASKHYSIFRILYQLAALSDPHTAGNLLCTAAKRNDLIVMNELLKQGLNIDSKDRRGNTAIQIAMTENHVDMVQLLVMNGADVSDVHTNEFSAYTLNEMLQKREVGHLINVNEAMSSEDVLKGQQYQEEKEHIRGRSNGLVCPRVSIYRGHPVVKRERGVMEAGKLIRLPDSLEELKTIAGEKFGFDARDAMVTNDEGAEIDCIDVIRDNDKVYIFE* 832
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g3374 831 ProSiteProfiles KHA domain profile. 758 831 IPR021789 -
Lja6g3374 831 Pfam Ion transport protein 79 327 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Lja6g3374 831 SUPERFAMILY Ankyrin repeat 505 710 IPR036770 -
Lja6g3374 831 Pfam KHA, dimerisation domain of potassium ion channel 757 829 IPR021789 -
Lja6g3374 831 ProSiteProfiles Ankyrin repeat profile. 670 702 IPR002110 GO:0005515
Lja6g3374 831 Gene3D Jelly Rolls 366 540 IPR014710 -
Lja6g3374 831 SUPERFAMILY cAMP-binding domain-like 325 517 IPR018490 -
Lja6g3374 831 CDD CAP_ED 398 511 IPR000595 -
Lja6g3374 831 ProSiteProfiles Ankyrin repeat profile. 573 605 IPR002110 GO:0005515
Lja6g3374 831 SMART ANK_2a 606 637 IPR002110 GO:0005515
Lja6g3374 831 SMART ANK_2a 573 602 IPR002110 GO:0005515
Lja6g3374 831 SMART ANK_2a 540 569 IPR002110 GO:0005515
Lja6g3374 831 SMART ANK_2a 640 666 IPR002110 GO:0005515
Lja6g3374 831 SMART ANK_2a 670 699 IPR002110 GO:0005515
Lja6g3374 831 ProSiteProfiles Ankyrin repeat region circular profile. 573 604 - -
Lja6g3374 831 SUPERFAMILY Voltage-gated potassium channels 73 321 - -
Lja6g3374 831 PRINTS Ankyrin repeat signature 686 700 IPR002110 GO:0005515
Lja6g3374 831 PRINTS Ankyrin repeat signature 574 589 IPR002110 GO:0005515
Lja6g3374 831 SMART cnmp_10 398 515 IPR000595 -
Lja6g3374 831 ProSiteProfiles Ankyrin repeat region circular profile. 670 698 - -
Lja6g3374 831 Gene3D - 80 321 - -
Lja6g3374 831 PRINTS EAG/ELK/ERG potassium channel family signature 268 285 IPR003938 GO:0005249|GO:0006813|GO:0016020
Lja6g3374 831 PRINTS EAG/ELK/ERG potassium channel family signature 312 321 IPR003938 GO:0005249|GO:0006813|GO:0016020
Lja6g3374 831 PRINTS EAG/ELK/ERG potassium channel family signature 115 125 IPR003938 GO:0005249|GO:0006813|GO:0016020
Lja6g3374 831 PRINTS EAG/ELK/ERG potassium channel family signature 126 135 IPR003938 GO:0005249|GO:0006813|GO:0016020
Lja6g3374 831 PRINTS EAG/ELK/ERG potassium channel family signature 294 305 IPR003938 GO:0005249|GO:0006813|GO:0016020
Lja6g3374 831 Pfam Cyclic nucleotide-binding domain 418 501 IPR000595 -
Lja6g3374 831 PANTHER POTASSIUM CHANNEL AKT2/3-LIKE 27 831 - -
Lja6g3374 831 Gene3D - 542 724 IPR036770 -
Lja6g3374 831 ProSiteProfiles cAMP/cGMP binding motif profile. 398 517 IPR000595 -
Lja6g3374 831 Pfam Ankyrin repeats (3 copies) 549 628 IPR002110 GO:0005515
Lja6g3374 831 Pfam Ankyrin repeats (3 copies) 633 698 IPR002110 GO:0005515
Lja6g3374 831 PANTHER POTASSIUM CHANNEL AKT1 27 831 IPR045319 GO:0005249|GO:0006813
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g3374 Lja-Chr6 61912900 61920288 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g3374 1 578 Ion Channels AT4G22200 71.355 0.0 848
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g3374 K21867 - gmx:100798422 1392.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja6g3374 6 61912900 61920288 Lja6g3374 6 61912900 61920288 ECH