Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g3368 ATGAAGATTGTGGCGGTGTTTCTTCTCTTTCTGCTGTTTCTTTGCAAAAACTCAGCTGCACCTTCCCCTTCTCCTTCTTCATCTGCATGCCCTGTTGACCTTAACTATGTTCGGAGAATCCCATGGAACTCCTCTGCTTGCCAAAACTTCAAATCTTTGTCATCCAAAAGTGAAGCAAGCTCCAACAATTGTTGCATCTCACTGTTATCTCTCTTTGGCATAGGACTAGCTCAGCACCTCAAAGAAACTTCCAATTTCAACCTCCCCAATCTCCAAACCTCAAATTCATGCATTCAAGATTTCCAAGCCAAGCTCAGTGCTCTGTCACTCCCCAATAACCTTGCTAGTTCCTGCTTTGACCCTCTTCAGTTTGTTATCTCCCCCAACATCTGTGCAGGTGTGGAGAATATTTCAGATTGGACCAGCAAGCTTGGTCAGAGCACACCACTCAACACTGCTTGTAGATCAGATCTCTCTGATACTTCCCTCTGTGATTTGTGCCTTAATGCTGGCTTACAGGTGAAGCAGACTCTTGTTTCCATTGATGGTAATGCTAACCACTCCTTGGAATGTTTTTACTTTGCTATTCTTTATGCTGCTGGGATTGTGAATGAGTTTGGACCTGAAAGCAATGGTGCTGTCACATGCATATTTAGTCTTCCTGTTTATTCCCAAGAGGGGTCTGGGGGAAAGGGTCACCGGACTCTTGTGTTTGGGTTGACAGGAGCTGGGGTTGCTTTGTTTGTCATGTCTTGTTTGTTGGCACTGTATGTCTGGCATGACAGGAAGCGTAGGCTGAGAAAGCTTGATAGTTTACCGTTCGATTTTGACCCTGAGGAACAAGGGTCTAAGCGTAGAATGAGACCGAATACCGGGTCGATTTGGTTCAAAATTGCGGAGCTTGAGAAGGCTACTGATAATTTTTCAACTAAGAACTTCATAGGGCGAGGCGGGTTTGGGTTGGTTTTCAAGGGAACCTTGCCTGATGGGACAGTGGTTGCTGTTAAGAAGATTTTAGAATCTGATTTTCAAGGGGATGCTGAGTTTTGTAATGAAGTGGAGATTATTAGCAATCTGAAGCACCGGAATCTGCTGCCGCTTAGGGGCTGCTGTGTTGTTGATGAGAATGAGAAGAATTATGCTGACAAGGGAAGCCAAAGATATCTTGTTTATGATTACATGCCAAATGGTAACCTTGAAGACAATCTCTTTATATCTCAGAAAGAGAAGAAACCACTGACTTGGCCTCAAAGAAAAAACATAATCTTGGATGTGGCAAAGGGATTGGTTTACTTGCACTATGGTGTTAAACCTGCAATTTTTCACAGGGATATCAAAGCCACCAATATACTTCTTGATGAAGACATGAGGGCAAGAGTTGCAGATTTCGGGCTTGCTAAACAAAGCAGGGAGGGCCAGTCTCATCTCACTACAAGAGTAGCTGGAACTCATGGATATCTAGCACCGGAATATGCACTATATGGTCAACTGACTGAGAAGAGTGATGTCTATAGCTTTGGTGTGGTTGTTTTGGAGATATTGTGTGGAAGGAAAGCTCTTGACTTGTCTTCATCAGGGTCACCAAGGGCATTCTTGATCACAGATTGGGCTTGGTCATTGGTGAAATCTGGGAACATAGATGAGGCGTTGGATTCTTCCTTGTTAAAAGACGAAAGCTCTTTTACTTCAAATCCTAAGAGCATAATGGAAAGGTATTTGCTGGTGGGAATTCTATGTTCCCATGTAATGGTTGCTTTGAGACCAACAATTACTGATGCTTTGAAGATGTTAGAAGGGGATATTGAGGTTCCTCAAATTCCAGATAGGCCTATGCCTCTTGGACACCCTTCATTTTACAATGATGGCAACACTTTTAGCATATCTCCGGCCCTTAGCGGCCCCAAATTGCAAGCTGGAGACATGCTCAGGACAATGAGTGAGAGCGCCGCCCTTCTAAGGGATATGCAAGTTCTTCCTTGA 1980 0.4389 MKIVAVFLLFLLFLCKNSAAPSPSPSSSACPVDLNYVRRIPWNSSACQNFKSLSSKSEASSNNCCISLLSLFGIGLAQHLKETSNFNLPNLQTSNSCIQDFQAKLSALSLPNNLASSCFDPLQFVISPNICAGVENISDWTSKLGQSTPLNTACRSDLSDTSLCDLCLNAGLQVKQTLVSIDGNANHSLECFYFAILYAAGIVNEFGPESNGAVTCIFSLPVYSQEGSGGKGHRTLVFGLTGAGVALFVMSCLLALYVWHDRKRRLRKLDSLPFDFDPEEQGSKRRMRPNTGSIWFKIAELEKATDNFSTKNFIGRGGFGLVFKGTLPDGTVVAVKKILESDFQGDAEFCNEVEIISNLKHRNLLPLRGCCVVDENEKNYADKGSQRYLVYDYMPNGNLEDNLFISQKEKKPLTWPQRKNIILDVAKGLVYLHYGVKPAIFHRDIKATNILLDEDMRARVADFGLAKQSREGQSHLTTRVAGTHGYLAPEYALYGQLTEKSDVYSFGVVVLEILCGRKALDLSSSGSPRAFLITDWAWSLVKSGNIDEALDSSLLKDESSFTSNPKSIMERYLLVGILCSHVMVALRPTITDALKMLEGDIEVPQIPDRPMPLGHPSFYNDGNTFSISPALSGPKLQAGDMLRTMSESAALLRDMQVLP* 660
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g3368 659 ProSitePatterns Serine/Threonine protein kinases active-site signature. 440 452 IPR008271 GO:0004672|GO:0006468
Lja6g3368 659 ProSiteProfiles Protein kinase domain profile. 308 573 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja6g3368 659 ProSitePatterns Protein kinases ATP-binding region signature. 314 337 IPR017441 GO:0005524
Lja6g3368 659 SMART serkin_6 308 597 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja6g3368 659 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 22 643 - -
Lja6g3368 659 Gene3D Phosphorylase Kinase; domain 1 278 393 - -
Lja6g3368 659 Pfam Protein kinase domain 309 522 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja6g3368 659 SUPERFAMILY Protein kinase-like (PK-like) 287 598 IPR011009 -
Lja6g3368 659 Gene3D Transferase(Phosphotransferase) domain 1 394 605 - -
Lja6g3368 659 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 30 - -
Lja6g3368 659 CDD STKc_IRAK 314 599 - -
Lja6g3368 659 Pfam SPARK 25 192 IPR043891 -
Lja6g3368 659 PANTHER RECEPTOR-LIKE PROTEIN KINASE-RELATED 22 643 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g3368 Lja-Chr6 61877334 61880127 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g3368 17 643 Receptor kinase-like Gene Family AT1G11050 64.388 0.0 803
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RKF3 Lja6g3368 Pkinase 2.3e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g3368 - - gmx:100806560 1023.46