Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g3349 ATGTCTTTTCCAGGCCGTCCTCGTATTGTTGTCAATGGGGTTCGAAGAATGAGAACTTTTCACTATTTCTGGTGCCTAAATTGCCAACGTACCGTGAGGATACCCTTTACTAACCCAAATGATCACCCTCTCTGCCCCTTTTGCTTCCTTCAACTGCGTTATGAGCTTGATATCTCATCAAGGCCAAGGCTTCTCATGAACAATGTGCCAAGTAACTTGCAACCTTCCCCTGCTTCTCAGATGATGCATAGCTTGTCTCTCATTCTTGATCCACCTAGAAGACAAAACAACCGGTTGAACACAAGACAATGGGAAATAGAACATGAAGATAATGACTTCATTGATGGGAGGATTCAGAGCAATCAACCAGGGCCACCTCCAGCATCATCTTCAGCCATTGCAGCCTTGCCAATAATGAAAGTGACACAGGCTCATTTGGCAAGTGATCCCAATTGTCCAATCTGCAAGTGTGAATTTGAGGTTGATGAGGAAGTGAGAGAGCTTCCATGCAAGCATTTCTACCATTCTGATTGCATTCTTCCTTGGCTGCGCTTGCACAACACTTGCCCTGTATGTCGCTATGAGCTACAAGGCGTTGCAAATGCAAATTACCTTTTCCAAAATGAGAATGAACAAAGGTTTGGATTTGAAGATATCACAAGCACCATGAACTGGATTTGGACTCAAGTCTCTTCATTCAGGCCTATCCGCACAGTCGTGAATTGGACACAATCCTACTTCGATTTCCAAGGCCGAGGAAACTCTTGGTGGCGAGCATTGCTCATTCTATAG 792 0.4457 MSFPGRPRIVVNGVRRMRTFHYFWCLNCQRTVRIPFTNPNDHPLCPFCFLQLRYELDISSRPRLLMNNVPSNLQPSPASQMMHSLSLILDPPRRQNNRLNTRQWEIEHEDNDFIDGRIQSNQPGPPPASSSAIAALPIMKVTQAHLASDPNCPICKCEFEVDEEVRELPCKHFYHSDCILPWLRLHNTCPVCRYELQGVANANYLFQNENEQRFGFEDITSTMNWIWTQVSSFRPIRTVVNWTQSYFDFQGRGNSWWRALLIL* 264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g3349 263 ProSiteProfiles Zinc finger RING-type profile. 152 193 IPR001841 -
Lja6g3349 263 SUPERFAMILY RING/U-box 132 197 - -
Lja6g3349 263 SMART ring_2 152 192 IPR001841 -
Lja6g3349 263 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 115 199 IPR013083 -
Lja6g3349 263 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 21 242 - -
Lja6g3349 263 CDD RING-H2_RNF181 152 196 - -
Lja6g3349 263 Pfam Ring finger domain 151 193 IPR001841 -
Lja6g3349 263 PANTHER ZINC FINGER, C3HC4 TYPE (RING FINGER) PROTEIN 21 242 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g3349 Lja-Chr6 61695713 61697110 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g3349 1 250 C3H Transcription Factor Family AT1G68180 37.643 2.55e-46 153
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g3349 K11982 - gmx:100793656 329.717