Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g3339 ATGCCAAAATCGAAACGGAATAAACAAGTTACACTATCGAAGACGAAGAAGAAGGGAAGAGAACACAAAGAGGTAATAGTGAACGCGATTAGAGATGCAGCTGAAAAGTACAGTTCGTTGTACGTGTTCTCCTTCGAGAACATGAGGAATCTCAAATTCAAGGAGTTCAGGGACCAATTGAAATCGAGTAGCAGATTCTTCCTTGGTTCCAACAAAGTCATGCAGGTCGCTCTTGGTCGTTCTGCTTCTGATGAGATCAAACCTCGCCTGTATAAGGTTTCAAAGTTGCTTCGCGGAGATTCTGGCATGTTTTTTACCAATTTGTCTAAAGAAGAAGTTGAAAGGCTGTTCAATGGATATGAGGAATATGACTTTGCAAGAACAGGAGGCATTGCCACCGAAAAGGTGGATCTCCAAGAGGGTCCTTTAGAGCAGTTTACACATGAGATGGAACCTTTTCTCAGGAAGCAAGGGATGCCTGTTCGGTTAAATAAAGGTGTTGTGGAGCTTGTTTCTGATTTTGTTGTTTGTGAAGAGGGAAAGCCCTTGTCACCTGAGGCATCTCGCATACTGCGTTTGCTGGGAATCAAGATGGCTACATTTCGACTTCACCTGGTTTGCAGGTGGACTCCCGATGATTTTGAACTTTACATTGATGGACCTGGTGATTCAGATGTTGAATGCTCATAG 690 0.4333 MPKSKRNKQVTLSKTKKKGREHKEVIVNAIRDAAEKYSSLYVFSFENMRNLKFKEFRDQLKSSSRFFLGSNKVMQVALGRSASDEIKPRLYKVSKLLRGDSGMFFTNLSKEEVERLFNGYEEYDFARTGGIATEKVDLQEGPLEQFTHEMEPFLRKQGMPVRLNKGVVELVSDFVVCEEGKPLSPEASRILRLLGIKMATFRLHLVCRWTPDDFELYIDGPGDSDVECS* 230
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g3339 229 PANTHER RIBOSOME ASSEMBLY FACTOR MRT4 1 228 - -
Lja6g3339 229 Pfam Insertion domain in 60S ribosomal protein L10P 126 196 IPR040637 -
Lja6g3339 229 Gene3D - 30 211 IPR043141 -
Lja6g3339 229 Pfam Ribosomal protein L10 19 120 IPR001790 -
Lja6g3339 229 PANTHER MRNA TURNOVER PROTEIN 4 MRTO4 1 228 - -
Lja6g3339 229 Gene3D - 125 198 IPR043164 -
Lja6g3339 229 CDD Ribosomal_P0_like 21 184 IPR033867 GO:0000027
Lja6g3339 229 SUPERFAMILY Ribosomal protein L10-like 20 144 IPR043141 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g3339 35 217 Cytoplasmic Ribosomal Protein Gene Family AT3G11250 22.404 1.10e-10 58.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g3339 K14815 - gmx:100305462 410.223
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja6g3339 6 61634802 61637063 Lja6g3339 6 61634802 61637063 ECH