Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g3335 ATGGAGGAGGAGAAGCAGCAGCGTTTGAAACCACGCCTTGAACGGCGAAACGCCATGAAGAACATCAACTACAAAGTTGACTACATGCACTTCCACAATAACCAAACCAGCTTCCGTGTCAAGGGAGTCGACGGAGAATTCGACCACATCTTCCGAACACTTGGCCTCTCTGGACCTGAAGACTTTGCCATACCTACCGCAGCTTGGGAACAAGCACAGAAGACTCGCTCTGCTGCTTCATCTCCTCATGCTCACCATGATCATATTCATGGTGTAATGCTTCAAAGGGACATCAACAACAATAACAACAACCTTATTTCCTCCGAACATGAGTCAAAGTCAAAGGTTGTTTTGGGTCAGAATATCAGGGATGTGGTGGGGATTAAGGGTGTTAGACCTCCCGTTCTGGCGCCGCCGCCGGCGATGTTGCGGTCACTTGTTATTGTTGACGAGGTCACTCCCACTTGGGATTTGATGAGGTCACTCGCCCCCCAACATGATCATGATCATGATGATGATGGTGATAGTGATGTTATTTGTGAGAGTGGAATGGATCAAAAGGTTTCTTCTGATATGGATATGGTTGTTAGTGACGAGTCTTTTCACAGTGTCTCCCCAAATGGGTCTTTTAGAAGGACTTTCAGCTCATGGCAAAAGGGTGAAATTTTAGGGAAGGGGTCCTTTGGAACCGTGTATGAAGGTTTCACTGATGATGGAATCTTTTTTGCAGTAAAGGAAGTGTCTTTGCTGGATGATGGAAGCCAGGGCAAACAGAGCATTTTCCAGCTTCAGCAGGAAATATCTCTTCTGAGTCAGTTTGAGCATGAGAATATAGTTCGATATCTTGGCACGGATAAGGAAAGTGATAAGCTTTATATCTTCCTTGAGCTTGTTACAAAAGGATCATTGGCAAGACTCTATCAAAAGTATCGTTTAAGAGACTCTCAAGTTTCTGTATACACAAGGCAAATATTAAGTGGCTTAAAGTATCTTCATGATCGTAATGTGGTTCACAGGGATATCAAGTGTGCCAATATATTGGTTGATGCAAATGGGTCCGTCAAGCTTGCAGATTTTGGGTTGGCGAAGGCAACCAAATTGAATGATGTTAAATCGAGTAAAGGCTCCCCATACTGGATGGCTCCTGAGGTTGTTAACTTAAGGAACCGTGGTTATGGACTAGCAGCTGATATATGGAGCTTAGGGTGCACAGTTTTAGAGATGTTGACACGGCAACCTCCTTACTCTCATTTGGAAGGAATGCAAGCGTTGTTTCGGATTGGCAGAGGTCAACCTCCACCTGTTCCGGAATCTTTATCAAAAGATGCTCGCGATTTCATTCATAGATGCTTACAAGTTAACCCAAATAAGCGACCGACTGCTGCTCAGTTATTGGATCATCCATTTGTCAAGAGACGACTTCTATCTCCACTTCTATCTCCCATTAGTCCTGTTTCTCCACGTATTAATCTTCTACTGTCTTAG 1485 0.4418 MEEEKQQRLKPRLERRNAMKNINYKVDYMHFHNNQTSFRVKGVDGEFDHIFRTLGLSGPEDFAIPTAAWEQAQKTRSAASSPHAHHDHIHGVMLQRDINNNNNNLISSEHESKSKVVLGQNIRDVVGIKGVRPPVLAPPPAMLRSLVIVDEVTPTWDLMRSLAPQHDHDHDDDGDSDVICESGMDQKVSSDMDMVVSDESFHSVSPNGSFRRTFSSWQKGEILGKGSFGTVYEGFTDDGIFFAVKEVSLLDDGSQGKQSIFQLQQEISLLSQFEHENIVRYLGTDKESDKLYIFLELVTKGSLARLYQKYRLRDSQVSVYTRQILSGLKYLHDRNVVHRDIKCANILVDANGSVKLADFGLAKATKLNDVKSSKGSPYWMAPEVVNLRNRGYGLAADIWSLGCTVLEMLTRQPPYSHLEGMQALFRIGRGQPPPVPESLSKDARDFIHRCLQVNPNKRPTAAQLLDHPFVKRRLLSPLLSPISPVSPRINLLLS* 495
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g3335 494 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 3 116 - -
Lja6g3335 494 PANTHER SERINE/THREONINE/DUAL SPECIFICITY PROTEIN KINASE, CATALYTIC DOMAIN-CONTAINING PROTEIN-RELATED 3 116 - -
Lja6g3335 494 PANTHER SERINE/THREONINE/DUAL SPECIFICITY PROTEIN KINASE, CATALYTIC DOMAIN-CONTAINING PROTEIN-RELATED 125 473 - -
Lja6g3335 494 Pfam Protein kinase domain 218 470 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja6g3335 494 ProSiteProfiles Protein kinase domain profile. 217 470 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja6g3335 494 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 125 473 - -
Lja6g3335 494 ProSitePatterns Serine/Threonine protein kinases active-site signature. 336 348 IPR008271 GO:0004672|GO:0006468
Lja6g3335 494 ProSitePatterns Protein kinases ATP-binding region signature. 223 245 IPR017441 GO:0005524
Lja6g3335 494 SUPERFAMILY Protein kinase-like (PK-like) 204 488 IPR011009 -
Lja6g3335 494 Gene3D Transferase(Phosphotransferase) domain 1 215 483 - -
Lja6g3335 494 SMART serkin_6 217 470 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g3335 Lja-Chr6 61556867 61560735 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g3335 12 78 MAP Kinase Kinase Kinase AT4G08500 38.372 6.46e-10 59.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Lja6g3335 Pkinase 1.2e-71 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g3335 - K13414 gmx:100806902 613.994
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja6g3335 6 61556867 61560735 Lja6g3335 6 61556867 61560735 ECH
Lja4g4100 4 74279002 74285608 Lja6g3335 6 61556867 61560735 PCT