Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g3326 ATGTCATTCCGCAGCATAGTTCGTGACGTGAGGGATAGTTTTGGGAGCTTATCTAGGCGTAGTTTTGATGTCAGACTTACTGGCCATCATAGAGGAAAATCTCATGGCTCGGTACAGGATTTGCATGACCAGCCTCTAGTAATTCAAAATAGTTGCTGGGCAAGCTTACCCCCAGAATTACTATTTGATGTCATTAGACGGCTAGAGGAGAGTGAGAATACATGGCCTGCTCGAAAGCATGTTGTTGCATGTGCTGCAGTTTGCCAGTCTTGGAGGAATATGTGCAAGGATATTGTTAAGAGCCCGGAGTTCTCTGGCAAGCTTACATTCCCTGTGTCCCTGAAGCAGCCTGGGCCACGCGATGGGATCATTCAATGTTTTATCAAAAGGGATAAATCTAACTTAACATACCACCTGTTCCTTTGCCTAAGCCCCGCTCTATTAGTTGAAAATGGAAAATTTCTCCTTTCTGCTAAGAGGACAAGGAGAACAACTTACACCGAGTACGTTATTTCCATGGATGCTGACAACATTTCTAGATCAAGTAATACTTACATTGGAAAGCTGAGATCGAACTTTCTCGGTACAAAATTCATCATCTATGACACACAGCCTCCATACTCTTCTGCCCATATATGCCCTCCTGGGACTGGGAAGACAAGCCGCAGGTTTTATTCCAAAAAGGTCTCGCCTAAGGTCCCATCTGGTAGTTACAACATAGCTCAGGTAACATATGAATTAAACGTGCTTGGGACTCGAGGCCCAAGGAAAATGCACTGCATTATGCACTCAATACCAGCCTCAGCACTTGATGCAGGCGGCACCGTTCCTGGCCAGCCAGAGCTCCTTCCTCGTTCCCTGGATGACTCATTCCGGAGCATCTCATTTTCAAAGTCTCTAGATCATTCTATCGAGTTCAGCAGCTCACGATTTTCTGAGATCGGGGGATCCTGTAACGAGGATGATGATGGCAGCAAGATGAGACCCTTGGTTCTGAAAAACAAGCCACCGAGATGGCATGAACAGTTGCAATGTTGGTGCCTTAATTTCCGGGGACGAGTAACTGTTGCGTCTGTTAAAAACTTTCAGTTGATTGCTGCAACCCAGCCACCAGCTGCAGGTGCACCTACACCATCTCAACCAGCTCCACCAGAGCACGACAAGATTATTCTGCAGTTTGGCAAAGTGGGGAAAGACATGTTCACCATGGATTATCGGTATCCTTTGTCTGCATTCCAAGCTTTTGCAATATGCTTAAGCAGCTTTGACACCAAACTAGCTTGTGAATAG 1290 0.4597 MSFRSIVRDVRDSFGSLSRRSFDVRLTGHHRGKSHGSVQDLHDQPLVIQNSCWASLPPELLFDVIRRLEESENTWPARKHVVACAAVCQSWRNMCKDIVKSPEFSGKLTFPVSLKQPGPRDGIIQCFIKRDKSNLTYHLFLCLSPALLVENGKFLLSAKRTRRTTYTEYVISMDADNISRSSNTYIGKLRSNFLGTKFIIYDTQPPYSSAHICPPGTGKTSRRFYSKKVSPKVPSGSYNIAQVTYELNVLGTRGPRKMHCIMHSIPASALDAGGTVPGQPELLPRSLDDSFRSISFSKSLDHSIEFSSSRFSEIGGSCNEDDDGSKMRPLVLKNKPPRWHEQLQCWCLNFRGRVTVASVKNFQLIAATQPPAAGAPTPSQPAPPEHDKIILQFGKVGKDMFTMDYRYPLSAFQAFAICLSSFDTKLACE* 430
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g3326 429 Gene3D Tubby Protein; Chain A 112 423 IPR025659 -
Lja6g3326 429 SUPERFAMILY Tubby C-terminal domain-like 102 429 IPR025659 -
Lja6g3326 429 SUPERFAMILY F-box domain 49 97 IPR036047 GO:0005515
Lja6g3326 429 Gene3D - 48 100 - -
Lja6g3326 429 PANTHER TUBBY-LIKE F-BOX PROTEIN 10-RELATED 1 429 - -
Lja6g3326 429 ProSitePatterns Tub family signature 2. 414 429 IPR018066 -
Lja6g3326 429 ProSitePatterns Tub family signature 1. 350 363 IPR018066 -
Lja6g3326 429 PRINTS Tubby superfamily signature 350 366 IPR000007 -
Lja6g3326 429 PRINTS Tubby superfamily signature 332 349 IPR000007 -
Lja6g3326 429 PRINTS Tubby superfamily signature 386 405 IPR000007 -
Lja6g3326 429 PRINTS Tubby superfamily signature 169 185 IPR000007 -
Lja6g3326 429 PRINTS Tubby superfamily signature 237 264 IPR000007 -
Lja6g3326 429 PRINTS Tubby superfamily signature 407 429 IPR000007 -
Lja6g3326 429 PRINTS Tubby superfamily signature 185 209 IPR000007 -
Lja6g3326 429 Pfam F-box domain 53 100 IPR001810 GO:0005515
Lja6g3326 429 PANTHER TUBBY-RELATED 1 429 - -
Lja6g3326 429 Pfam Tub family 114 424 IPR000007 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g3326 Lja-Chr6 61497999 61502451 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g3326 1 429 TUB Transcription Factor Family AT1G76900 70.282 0.0 620
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Lja6g3326 Tub 1.4e-117 CL0395
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja6g3326 6 61497999 61502451 Lja6g3326 6 61497999 61502451 ECH