Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g3316 ATGGTTGGAAGTTTTGGTGTTTTAGCTGACGATTTGAGCATCAATGGAGCAGTTGAACCATTGCCTGAGGATTTTGACACAACAGCCATAATCAAGGATCCTGTGCCTCCTGTGGTTGGAGAAAATGGCGTTGTCAGTGGGGAGGCTCAGGTCAGCAAGGGAAAAGAGAAAAGAGAAATAGTTCTGGGAAGAAATATTCACACTACGTGTCTAGAAGTCACAGAGCCTGAAGCAGATGATGAGGTTACTGGGGATCGGGAAGCTAATATGGCAAGCGTGTTGGCCAGATACAAAAAATCTTTAACTGAAAGGACAAAGCATCATTTAGGCTACCCTTATAATTTGGATTTCGACTATGGTGCACTTTCTCAACTTCAACACTTTTCCATAAACAACCTTGGAGATCCATTTATTGAAAGCAACTATGGTGTCCATTCCCGGCAGTTTGAAGTTGGTGTTTTGGATTGGTTTGCCAGGTTGTGGGAACTGGAGAAAAATGAGTACTGGGGCTATATAACAAACTGTGGTACAGAAGGCAATCTCCACGGCATCCTAGTTGGGAGAGAGGTGTATCCAGATGGGGTTCTGTATGCCTCACGGGAGTCACACTATTCCATTTTTAAAGCTGCTCGTATGTACAGAATGGAATGTGTTAAGGTTGACACTCTTTGGTCTGGCGAGATTGATTGTGATGATTTCAAGACCAAGCTTCTACTTCACCAGGACAAGCCAGCAATTATTAATGTGAATATAGGTACAACTGTGAAAGGAGCTGTGGATGATCTTGATATGGTCATCAAGAAACTCGAAGAAGCTGGGTTTTCGCATGACAGGTTCTACATCCATGTCGATGGGGCTTTGTTTGGTCTCATGATGCCTTTCGTGAAACAAGCTCCAAAAGTTACTTTTAAGAAGCCGATTGGCAGTGTCAGTGTTTCTGGCCACAAATTTGTTGGGTGCCCCATGCCTTGTGGTGTGCAGATAACAAGATTGGAGTATGTTAATGCTCTTTCCAGGGACGTGGAATACCTTGCTTCTAGGGATGCCACTATCATGGGTAGTCGGAATGGCCATGCTCCCATATTTCTTTGGTATACCTTGAACCGGAAAGGATACAGAGGTTTTCAGAAAGAAGTACAGAAATGCTTGCGGAATGCACATTACTTCAAAGACCGCCTTGTCGAGGCAGGGATCGGTGCAATGCTTAATGAGCTGAGCAGCACAGTTGTGTTTGAGCGGCCACACGATGAGGAATTTATACGCAAGTGGCAGTTGGCATGCAAGGGGAACATTGCACATGTGGTGGTAATGCCAAACATCACTATTGAGAAGCTTGATGATTTTCTAGAGGAGCTTATGCAGAATCGTGCTACCTGGTTTCAAGATGGGAAGTACACACCTTATTGTATTGCATCAGATGTAGGTGAAAAAGATTGCCTTTGTGCTTTACATAAGTAA 1458 0.4396 MVGSFGVLADDLSINGAVEPLPEDFDTTAIIKDPVPPVVGENGVVSGEAQVSKGKEKREIVLGRNIHTTCLEVTEPEADDEVTGDREANMASVLARYKKSLTERTKHHLGYPYNLDFDYGALSQLQHFSINNLGDPFIESNYGVHSRQFEVGVLDWFARLWELEKNEYWGYITNCGTEGNLHGILVGREVYPDGVLYASRESHYSIFKAARMYRMECVKVDTLWSGEIDCDDFKTKLLLHQDKPAIINVNIGTTVKGAVDDLDMVIKKLEEAGFSHDRFYIHVDGALFGLMMPFVKQAPKVTFKKPIGSVSVSGHKFVGCPMPCGVQITRLEYVNALSRDVEYLASRDATIMGSRNGHAPIFLWYTLNRKGYRGFQKEVQKCLRNAHYFKDRLVEAGIGAMLNELSSTVVFERPHDEEFIRKWQLACKGNIAHVVVMPNITIEKLDDFLEELMQNRATWFQDGKYTPYCIASDVGEKDCLCALHK* 486
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g3316 485 Gene3D Aspartate Aminotransferase, domain 1 368 456 IPR015422 GO:0003824
Lja6g3316 485 PANTHER SERINE DECARBOXYLASE 1 485 - -
Lja6g3316 485 Gene3D - 123 367 IPR015421 GO:0003824
Lja6g3316 485 PANTHER - 1 485 - -
Lja6g3316 485 Pfam Pyridoxal-dependent decarboxylase conserved domain 192 406 IPR002129 GO:0016830|GO:0019752|GO:0030170
Lja6g3316 485 ProSitePatterns DDC / GAD / HDC / TyrDC pyridoxal-phosphate attachment site. 309 330 IPR021115 GO:0016831
Lja6g3316 485 SUPERFAMILY PLP-dependent transferases 105 454 IPR015424 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g3316 Lja-Chr6 61375656 61380259 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g3316 208 391 Calmodulin-binding Proteins AT1G65960 26.425 4.97e-09 56.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g3316 K25193 - gmx:100785163 913.294