Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g3310 ATGGTGAACGTTCCAAAGACGAAGAAGACCTACTGCAAGAGCAAGGAGTGCAAGAAGCACACTCTTCACAAGGTTACCCAGTACAAGAAGGGTAAGGACAGCATTGCTGCTCAGGGGAAGCGTCGTTATGATCGGAAGCAATCTGGTTATGGTGGTCAGACCAAGCCTGTCTTCCACAAGAAGGCTAAAACCACCAAGAAAATTGTGCTGAGGCTGCAATGCCAGGGTTGCAAGCATGTTTCCCAGCATGCTATCAAGAGGTGCAAGCACTTTGAAATTGGTGGTGACAAGAAGGGCAAGGGAACATCTCTGTTTTAG 318 0.4811 MVNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSIAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHAIKRCKHFEIGGDKKGKGTSLF* 106
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g3310 105 Pfam Ribosomal protein L44 19 94 IPR000552 GO:0003735|GO:0005840|GO:0006412
Lja6g3310 105 PANTHER 60S RIBOSOMAL PROTEIN L44-LIKE 2 105 - -
Lja6g3310 105 Gene3D - 1 105 - -
Lja6g3310 105 MobiDBLite consensus disorder prediction 28 56 - -
Lja6g3310 105 SUPERFAMILY Zn-binding ribosomal proteins 2 94 IPR011332 GO:0006412
Lja6g3310 105 ProSitePatterns Ribosomal protein L44e signature. 63 74 IPR000552 GO:0003735|GO:0005840|GO:0006412
Lja6g3310 105 PANTHER 60S RIBOSOMAL PROTEIN L36A/L44 2 105 IPR000552 GO:0003735|GO:0005840|GO:0006412
Lja6g3310 105 MobiDBLite consensus disorder prediction 28 48 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g3310 Lja-Chr6 61354464 61355599 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g3310 1 105 Cytoplasmic Ribosomal Protein Gene Family AT3G23390 92.381 1.82e-67 196
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g3310 K02929 - ini:109148838 214.157
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g4074 4 73874586 73875703 Lja6g3310 6 61354464 61355599 PCT