Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g3308 ATGGGAGATAACAATGTCAACCTTCCGCCCGGATTTCGATTTTATCCAACAGATGAGGAGCTTGTAGTTCATTTTCTTCATAGAAAAGCAGAACTTCTACCTTGCCACCCCGATGTCATCCCTGATCTTGAGCTCTACTCATATGATCCATGGGAACTTGATGGTAGAGCTTTGGCAGAGGGAAATCAATGGTACTACTACAGCAGAAGGACACAAAATAGGGTCACTGAGAATGGATATTGGAAGCCAACAGGAATTGAAGAGCCAGTGATTTCTAGCACAAGCAATAAGAGAGTTGGCATGAAGAAATATTTCATGTTCCATTTGGGAGAAGCCAAAACCAATTGGATAATGCAAGAATATCGTCTATCAGATTCTGCTTCCTCCAGCAGCAGATCATCCAAAAGAAAATCACAACAAAAAACAGATTTTAATAAATGGGTGATATGTCGTGTTTATGAGTGCAAAGAAGATGGTGATGATGGAACAGAGCTTTCTTGTTTGGATGAAGTTTTCTTGTCACTTGATGATCTTGAAGAAATAAGCTTACCAAATTAG 558 0.3961 MGDNNVNLPPGFRFYPTDEELVVHFLHRKAELLPCHPDVIPDLELYSYDPWELDGRALAEGNQWYYYSRRTQNRVTENGYWKPTGIEEPVISSTSNKRVGMKKYFMFHLGEAKTNWIMQEYRLSDSASSSSRSSKRKSQQKTDFNKWVICRVYECKEDGDDGTELSCLDEVFLSLDDLEEISLPN* 186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g3308 185 ProSiteProfiles NAC domain profile. 8 155 IPR003441 GO:0003677|GO:0006355
Lja6g3308 185 SUPERFAMILY NAC domain 5 153 IPR036093 GO:0003677|GO:0006355
Lja6g3308 185 Gene3D NAC domain 17 159 IPR036093 GO:0003677|GO:0006355
Lja6g3308 185 PANTHER NAC TRANSCRIPTION FACTOR 56 5 182 - -
Lja6g3308 185 Pfam No apical meristem (NAM) protein 9 123 IPR003441 GO:0003677|GO:0006355
Lja6g3308 185 PANTHER NAC DOMAIN-CONTAINING PROTEIN 104 5 182 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g3308 Lja-Chr6 61336109 61337686 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g3308 1 181 NAC Transcription Factor Family AT1G61110 37.438 6.35e-41 139
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Lja6g3308 NAM 1e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g3308 - - gmx:100170712 331.257
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g4072 4 73861672 73863282 Lja6g3308 6 61336109 61337686 PCT