Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g3303 ATGGAGAGAGTGAATTCATCTTCTAAGGCTTCATTTCTTGTTTGGGCAATTATTGTGCTTGATTTGGTGCTTAAGGCTTCTGGCAATGCTGAAGGTGATGCCCTCAATGCATTGAAAAGCAACTTGAATGATCCTAACAACGTTCTTCAAAGTTGGGATGCTACCCTTGTCAATCCCTGCACATGGTTTCATGTTACATGCAATGGTGATAACAGTGTGACCCGTGTTGATCTTGGAAATGCAGACCTTTCTGGTCAGCTGGTTCCACAACTTGGTCAGCTCTCAAATTTGCAGTACTTGGAACTTTATAGTAATAATATGACTGGAAAAATTCCAGATGAGCTTGGAAATTTGACAAACTTGGTGAGCTTGGATCTTTACTTGAACAATTTAACTGGAAACATACCGAGTACATTGGGCAACCTTGGTAAACTACGTTTCCTGCGTCTCAATAATAATACTTTGTCTGGAGGCATTCCCATGACTTTGACAAATGTTTCTTCACTGCAAGTTCTTGATCTCTCAAACAACCAACTAAAAGGGGTTGTCCCTGTGAACGGTTCATTTTCATTGTTTACCCCCATCAGTTATCAAAATAATCCTGGCCTAATACAACCAAAAAACCCTCCATCTGCACCACTTTCTCCGCCATCACAAGCTTCTTCAGGTAACAGTAATACTGGAGCTATTGCAGGAGGAGTAGCTGCTGGGGCTGCTCTGTTGTTTGCAGCCCCTGCAATTGCACTTGCTTATTTGCGAAAAAAGAAACCTGAAGATCATTTCTTTGACGTTCCTGCTGAGGAGGATCCTGAAGTTCACCTTGGTCAGCTTAAAAGGTTTTCTCTACGTGAGCTGCAAGTCGCAACAGATAACTTTAGTAACAAACACATTCTGGGTAGAGGTGGATTTGGAAAGGTTTACAAAGGACGCCTAGCTGATGGCACTCTCGTAGCAGTAAAAAGACTTAAAGAAGAGCGCACACAGGGTGGGGAGCTGCAATTTCAAACAGAAGTGGAAATGATCAGCATGGCTGTGCATCGTAATCTGCTTCGGCTTCGTGGCTTTTGCATGACGCCTACTGAACGGTTGCTTGTGTATCCTTTCATGGTTAATGGAAGTGTGGCATCATGTTTAAGAGATCGTCCTGAAACTCAACCGCCACTTGACTGGCCGATACGGCAGCGTATTGCACTGGGATCTGCCAGGGGACTTTCTTATTTGCATGATCATTGTGACCCGAAGATTATTCATCGTGATGTCAAGGCTGCAAATATATTGTTGGATGAGGAATTTGAAGCAGTTGTTGGAGATTTTGGTTTGGCAAAACTTATGGATTACAAAGATACTCATGTTACTACCGCTGTACGCGGTACGATTGGGCATATAGCACCAGAGTACCTGTCAACTGGAAAGTCTTCCGAAAAGACTGATGTTTTTGGATACGGAGTGATGCTTCTTGAACTAATAACTGGACAGAGGGCTTTCGATCTAGCACGTCTTGCCAATGACGATGATGTGATGTTGCTCGATTGGGTTAAAGGACTTCTGAAAGACAAGAGGTTGGAAACACTGGTAGATGCGGATTTAGAGGGAAATTATATTGATGAGGAGGTAGAGCAGTTAATCCAAGTGGCCTTACTATGCACACAAGGCTCCCCTATGGAAAGACCAAAAATGTCTGAGGTGGTTAGAATGCTAGAAGGTGATGGTTTGGCTGAGAAATGGGAGCAATGGCAGAAAGAGGAGATGTTCCGGCAAGATTTCAACAGCAACATGCCTCACCCTAGTGCAAATTGGATAGTAGACTCAACTTCACATATCCAGCCAGATGAACTATCAGGCCCTAGATGA 1851 0.4349 MERVNSSSKASFLVWAIIVLDLVLKASGNAEGDALNALKSNLNDPNNVLQSWDATLVNPCTWFHVTCNGDNSVTRVDLGNADLSGQLVPQLGQLSNLQYLELYSNNMTGKIPDELGNLTNLVSLDLYLNNLTGNIPSTLGNLGKLRFLRLNNNTLSGGIPMTLTNVSSLQVLDLSNNQLKGVVPVNGSFSLFTPISYQNNPGLIQPKNPPSAPLSPPSQASSGNSNTGAIAGGVAAGAALLFAAPAIALAYLRKKKPEDHFFDVPAEEDPEVHLGQLKRFSLRELQVATDNFSNKHILGRGGFGKVYKGRLADGTLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYPFMVNGSVASCLRDRPETQPPLDWPIRQRIALGSARGLSYLHDHCDPKIIHRDVKAANILLDEEFEAVVGDFGLAKLMDYKDTHVTTAVRGTIGHIAPEYLSTGKSSEKTDVFGYGVMLLELITGQRAFDLARLANDDDVMLLDWVKGLLKDKRLETLVDADLEGNYIDEEVEQLIQVALLCTQGSPMERPKMSEVVRMLEGDGLAEKWEQWQKEEMFRQDFNSNMPHPSANWIVDSTSHIQPDELSGPR* 617
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g3303 616 Pfam Protein kinase domain 293 564 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja6g3303 616 ProSiteProfiles Protein kinase domain profile. 292 576 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja6g3303 616 PANTHER BNAA08G11770D PROTEIN 11 616 IPR031048 GO:0004675|GO:0005102|GO:0006468
Lja6g3303 616 Pfam Leucine rich repeat N-terminal domain 29 68 IPR013210 -
Lja6g3303 616 Gene3D Ribonuclease Inhibitor 28 212 IPR032675 -
Lja6g3303 616 SUPERFAMILY Protein kinase-like (PK-like) 271 567 IPR011009 -
Lja6g3303 616 SUPERFAMILY L domain-like 31 195 - -
Lja6g3303 616 SMART serkin_6 292 566 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja6g3303 616 ProSitePatterns Protein kinases ATP-binding region signature. 298 320 IPR017441 GO:0005524
Lja6g3303 616 Gene3D Transferase(Phosphotransferase) domain 1 369 586 - -
Lja6g3303 616 ProSiteProfiles Leucine-rich repeat profile. 168 189 IPR001611 GO:0005515
Lja6g3303 616 Gene3D Phosphorylase Kinase; domain 1 261 368 - -
Lja6g3303 616 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 11 616 - -
Lja6g3303 616 MobiDBLite consensus disorder prediction 202 225 - -
Lja6g3303 616 ProSitePatterns Serine/Threonine protein kinases active-site signature. 415 427 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g3303 Lja-Chr6 61285615 61292011 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g3303 13 616 Receptor kinase-like Gene Family AT4G33430 77.795 0.0 975
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-II Lja6g3303 Pkinase 1.4e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g3303 K13416 - gmx:100800522 1076.62
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja6g3303 6 61285615 61292011 Lja6g3303 6 61285615 61292011 ECH