Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g3297 ATGAATGTTTTATCCTTAAGCTCCTCAAGCCTTAACATTTCCAAACCATTTGATTTCCTTCCACTCTCAAATAAACACAAAAGTAGACCTTCTCTTTCTGTTTCATGCAGCAGAGCCACAAAACTTGAGACCAGCCATGGAAACTTGTACAAGATACTATCATTGAGCCCCAAAAGTGCAACCATGGATGACATAAAAAAGGCTTACAGAAGCATGGCGCTTCAGTACCACCCTGATGTGTGCAGTTTGAAGAAAGAGGAGTCGACCAAGATGTTTGTGCAGCTCAATGCAGCTTACAAGACGTTGTCGAATCCGAGGCTTCGAGAAGAGTATGATTATGAGTTGGGTTTGATGATGAGAAGTGAAATAAGGGGTGGTGGTGGTGGTGATGAGAGTTGGAGAAGAGTGTGGATGGAGCAAGTGGCTGAGTTGAAGAGAAGGTCTGAAAGACGCAGGGCACACAAGGAAAAGGGGGATTCATGGGGCAGTAGAATGAGGGCGCAAAACATGATGAATAATTAA 522 0.4387 MNVLSLSSSSLNISKPFDFLPLSNKHKSRPSLSVSCSRATKLETSHGNLYKILSLSPKSATMDDIKKAYRSMALQYHPDVCSLKKEESTKMFVQLNAAYKTLSNPRLREEYDYELGLMMRSEIRGGGGGDESWRRVWMEQVAELKRRSERRRAHKEKGDSWGSRMRAQNMMNN* 174
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g3297 173 PRINTS DnaJ domain signature 51 69 IPR001623 -
Lja6g3297 173 PRINTS DnaJ domain signature 87 107 IPR001623 -
Lja6g3297 173 PRINTS DnaJ domain signature 69 84 IPR001623 -
Lja6g3297 173 PANTHER CHAPERONE PROTEIN DNAJ 20 CHLOROPLASTIC 5 172 - -
Lja6g3297 173 Pfam DnaJ domain 48 112 IPR001623 -
Lja6g3297 173 SUPERFAMILY Chaperone J-domain 42 115 IPR036869 -
Lja6g3297 173 CDD DnaJ 48 104 IPR001623 -
Lja6g3297 173 Gene3D DnaJ domain 34 124 IPR036869 -
Lja6g3297 173 ProSiteProfiles dnaJ domain profile. 48 115 IPR001623 -
Lja6g3297 173 PANTHER CHAPERONE DNAJ DOMAIN PROTEIN 5 172 - -
Lja6g3297 173 SMART dnaj_3 47 107 IPR001623 -
Lja6g3297 173 MobiDBLite consensus disorder prediction 147 162 - -
Lja6g3297 173 MobiDBLite consensus disorder prediction 147 173 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g3297 Lja-Chr6 61249868 61250666 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g3297 50 112 C2H2 Transcription Factor Family AT1G74250 40.299 2.72e-08 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g3297 - - lja:Lj4g3v0338240.1 232.646
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja6g3297 6 61249868 61250666 Lja6g3297 6 61249868 61250666 ECH
Lja4g4063 4 73778535 73779503 Lja6g3297 6 61249868 61250666 PCT