Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g3294 ATGGCAGCTGCTGCAACATCTGGTGCTGTGTTAAATGGCCTAGGATCTTCCTTCTTGTGTGGAGGAAATAGGAGCCAAACCTTGCTGGCTTCTGCTGCTGGAGCCAAAGCTGGTGCTGCTGTTAGTCCTAAAAGACTTATTGTAGCTGCTGCTGCTGCTGCACCAAAGAAGTCATGGATCCCTGCTGTTAAAGGTGGTGGGAATCTCGTCGACCCAGAATGGCTTGATGGATCGCTACCTGGTGACTTTGGTTTTGACCCACTAGGCCTAGGAAAGGACCCAGCGTTCCTCAAATGGTACAGAGAAGCTGAGCTCATTCATGGAAGGTGGGCAATGGCTGCAGTTTTGGGCATCTTTGTTGGCCAAGCATGGAGTGGAGTTCCATGGTTTGAGGCTGGAGCTGACCCCAATGCAATTGCTCCTTTCTCCTTTGGTTCTCTTCTGGGCACCCAGTTGATTCTCATGGGGTGGGTAGAGAGCAAGAGATGGGTGGACTTCTTCAACCCAGATTCTCAGTCGGTGGAATGGGCCACTCCATGGTCTAAGACTGCTGAGAATTTCGCCAATTACACCGGTGATCAAGGCTACCCAGGTGGCAAATTCTTCGATCCATTGGCCTTAGCTGGCACTCTCCAAGATGGAGTTTACATTCCAGACAAGGAGAAGCTGGAAAGATTGAAACTTGCTGAGATCAAGCATGCCAGGCTTGCAATGTTGGCCATGCTGATTTTCTACTTTGAGGCTGGACAAGGGAAGACCCCCCTTGGTGCTCTAGGCTTGTAA 783 0.5057 MAAAATSGAVLNGLGSSFLCGGNRSQTLLASAAGAKAGAAVSPKRLIVAAAAAAPKKSWIPAVKGGGNLVDPEWLDGSLPGDFGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVLGIFVGQAWSGVPWFEAGADPNAIAPFSFGSLLGTQLILMGWVESKRWVDFFNPDSQSVEWATPWSKTAENFANYTGDQGYPGGKFFDPLALAGTLQDGVYIPDKEKLERLKLAEIKHARLAMLAMLIFYFEAGQGKTPLGALGL* 261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g3294 260 PANTHER CHLOROPHYLL A-B BINDING PROTEIN CP24 10A, CHLOROPLASTIC 4 260 - -
Lja6g3294 260 Gene3D Chlorophyll a/b binding protein domain 72 259 - -
Lja6g3294 260 Pfam Chlorophyll A-B binding protein 72 248 IPR022796 -
Lja6g3294 260 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 4 260 IPR001344 GO:0009765|GO:0016020
Lja6g3294 260 SUPERFAMILY Chlorophyll a-b binding protein 64 260 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g3294 Lja-Chr6 61227090 61228841 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g3294 3 260 Chloroplast and Mitochondria Gene Families AT1G15820 86.822 3.89e-159 440
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g3294 K08917 - gmx:100500118 476.863
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja6g3294 6 61227090 61228841 Lja6g3294 6 61227090 61228841 ECH