Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g3289 ATGGGGTTTCCACTTTCCTTAAATGACACAGAAAACAGTGAAGGCCAGAATACAGCTTCAGGCAAAAACAACAGTTCCAATATTTTGTTAATTTTCATTGTGGTTCTTCTGGTTGCAATTATACTGCTATTGATTATGTACTATAAGACATCCAGAAAGCTCAGTAAAATAGTGAACGGGCAGGTTCCAGCGGTTGAAGAAAAAGAGAAAGATGTGGAGTTCAGTGCTGAGAAGAAGATAGCTATAGGGGAGGGGACAATGATGACAGTTGAAGATAGAAAGGAGCTTGTGTTCTTCAATGACAAGCTAAAATTTCAAATGGGTGAGCTTCTGAGAGCTTCTGCTGAGGCATTGGGTCATGGAATCATGGGGAATAGTTACAAGGCTATGCTGAATGATGGATCCACCATTGTTGTGAAGAGACTAAGGGACTTGAAACCACTCACTAAGGAGGAATTTGAAAGGATAGTGCAAGTGATTGCTAATCTAAAGCACCCAAATTTGCTGCCATTGCTTGCTTACTACCATTCCAGAGATGAGAAGCTCATGCTCTATAGATATGCAGACAATGGAAATCTTTTCTCCAGACTTCATGATGGTAGAGATGGAAACCGGGTTCCATTCAGCTGGAACTCAAGATTATCAGTAGCAAGAGGCGTGGCTCGAGCATTGGAGTACCTTCACCTCAACAACAAGTTCCACAACATTGTCCCTCATGGCAACTTGAGGTCTTCTAACGTGCTCTTCGATGCAAACGACACTGTTCTTGTTTCAGACTTCAGCCTTGCCTCCTTAATAGCACAGCCAATTGCAGCTCAGCACATGGTTGTTTACAAATCACCTGAATATGGGTTGGCAAGAAAGGTTACAGTGCAATCTGATGTTTGGAGCTATGGTTCCCTTCTAATAGAACTTCTAACTGGCAAAGTATCTATGTGCTCTGCTCCACCAGGGACCAATGGGGTGGATCTCTGCAACTGGGTTCACAGGGCCGTCAGAGAAGAATGGACAGCTGAGATCTTTGACAAAGAGATTTCATGCCAGAAGAGTGCACTTCAAGGGATGCTGAGGTTGCTGCAGATCGCAATGCGTTGCATCGAGAGGCTCCCAGAGAAACGTCCTGCGATGAGAGAGGTGGTGAGAGAAGTGGAGAAGATACATACTCCTGTGATCAATGACGATGAGGATGATGCATCTGGTGACAGGTCTTTCACTGTCACGGACGATTCCTTTTCAACCAGTGCCTCTGGGATCATCGGAGATGAAAGATAG 1272 0.4442 MGFPLSLNDTENSEGQNTASGKNNSSNILLIFIVVLLVAIILLLIMYYKTSRKLSKIVNGQVPAVEEKEKDVEFSAEKKIAIGEGTMMTVEDRKELVFFNDKLKFQMGELLRASAEALGHGIMGNSYKAMLNDGSTIVVKRLRDLKPLTKEEFERIVQVIANLKHPNLLPLLAYYHSRDEKLMLYRYADNGNLFSRLHDGRDGNRVPFSWNSRLSVARGVARALEYLHLNNKFHNIVPHGNLRSSNVLFDANDTVLVSDFSLASLIAQPIAAQHMVVYKSPEYGLARKVTVQSDVWSYGSLLIELLTGKVSMCSAPPGTNGVDLCNWVHRAVREEWTAEIFDKEISCQKSALQGMLRLLQIAMRCIERLPEKRPAMREVVREVEKIHTPVINDDEDDASGDRSFTVTDDSFSTSASGIIGDER* 424
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g3289 423 Pfam Protein tyrosine and serine/threonine kinase 116 382 IPR001245 GO:0004672|GO:0006468
Lja6g3289 423 ProSiteProfiles Protein kinase domain profile. 112 390 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja6g3289 423 PANTHER OS05G0588300 PROTEIN 10 419 - -
Lja6g3289 423 MobiDBLite consensus disorder prediction 391 423 - -
Lja6g3289 423 Gene3D Phosphorylase Kinase; domain 1 76 187 - -
Lja6g3289 423 SUPERFAMILY Protein kinase-like (PK-like) 116 387 IPR011009 -
Lja6g3289 423 MobiDBLite consensus disorder prediction 1 21 - -
Lja6g3289 423 PANTHER RECEPTOR-LIKE KINASE 10 419 - -
Lja6g3289 423 Gene3D Transferase(Phosphotransferase) domain 1 189 406 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g3289 Lja-Chr6 61197514 61199397 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g3289 83 408 Receptor kinase-like Gene Family AT2G36570 41.159 4.29e-80 258
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Lja6g3289 PK_Tyr_Ser-Thr 1.5e-30 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g3289 - - mtr:MTR_2g008740 628.246
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja6g3289 6 61197514 61199397 Lja6g3289 6 61197514 61199397 ECH